J. Manthey

发表

Extensive paraphyly in the typical owl family (Strigidae)

B. Faircloth, R. T. Brumfield, Peter A. Hosner, 2019, The Auk.

Varied diversification patterns and distinct demographic trajectories in Ethiopian montane forest bird (Aves: Passeriformes) populations separated by the Great Rift Valley

S. Boissinot, Y. Bourgeois, J. Manthey, 2022, Molecular ecology.

Comparative phylogeography and niche modeling for three species complexes of SE China (Paradoxornis spp., Pycnonotus spp., Spizixos spp.)

Luke B. Klicka, Y. Qu, Luke C Campillo, 2015 .

De novo assembly of a chromosome-scale reference genome for the northern flicker Colaptes auratus

J. Manthey, Jack P. Hruska, J. Hruska, 2020, bioRxiv.

Recent Secondary Contacts, Linked Selection, and Variable Recombination Rates Shape Genomic Diversity in the Model Species Anolis carolinensis

S. Boissinot, Y. Bourgeois, Robert P. Ruggiero, 2019, Genome biology and evolution.

1 Genomic differentiation in an endemic Philippine genus ( Aves : Sarcophanops ) due to 2 geographic isolation on recently disassociated islands 3 4

R. C. Thomson, Peter A. Hosner, Luke C Campillo, 2019 .

Varied diversification patterns and distinct demographic trajectories in Ethiopian montane forest bird (Aves: Passeriformes) populations separated by the Great Rift Valley

S. Boissinot, Y. Bourgeois, J. Manthey, 2021, Molecular ecology.

Mid-Cretaceous paleogeography and paleoceanography of the Betic Seaway (Betic Cordillera, Spain)

W. Kuhnt, J. Thurow, J. Wiedmann, 1994 .

Genomic differentiation in an endemic Philippine genus (Aves: Sarcophanops) owing to geographical isolation on recently disassociated islands.

R. C. Thomson, Peter A. Hosner, R. Moyle, 2019, Biological journal of the Linnean Society. Linnean Society of London.

Impact of host demography and evolutionary history on endosymbiont molecular evolution: A test in carpenter ants (genus Camponotus) and their Blochmannia endosymbionts

J. Manthey, Jack P. Hruska, J. Girón, 2022, Ecology and evolution.

Population connectivity across a highly fragmented distribution: phylogeography of the Chalcophaps doves.

L. Joseph, Peter A. Hosner, J. Dumbacher, 2021, Molecular phylogenetics and evolution.

Recombination rate variation shapes genomic variability of phylogeographic structure in a widespread North American songbird (Aves: Certhia americana)

G. Spellman, J. Manthey, 2022, bioRxiv.

Tectonic collision and uplift of Wallacea triggered the global songbird radiation

B. Faircloth, Rafe M. Brown, Peter A. Hosner, 2016, Nature Communications.

Biodiversity genomics of North American Dryobates woodpeckers reveals little gene flow across the D. nuttallii x D. scalaris contact zone

S. Boissinot, R. Moyle, J. Manthey, 2019, The Auk.

Genomic insights into hybridization in a localized region of sympatry between pewee sister species (Contopus sordidulus × C. virens) and their chromosomal patterns of differentiation

M. Robbins, J. Manthey, 2016, Avian Research.

Conservation genomics of the silktail (Aves: Lamprolia victoriae) suggests the need for increased protection of native forest on the Natewa Peninsula, Fiji

Michael J. Andersen, Alivereti N. Naikatini, R. Moyle, 2017, Conservation Genetics.

The Genomic Signature of Allopatric Speciation in a Songbird Is Shaped by Genome Architecture (Aves: Certhia americana)

G. Spellman, J. Klicka, J. Manthey, 2021, Genome biology and evolution.

The Mobilome of Reptiles: Evolution, Structure, and Function

S. Boissinot, Y. Bourgeois, J. Manthey, 2019, Cytogenetic and Genome Research.

Increased differentiation and reduced gene flow in sex chromosomes relative to autosomes between lineages of the brown creeperCerthia americana

G. Spellman, J. Manthey, 2014 .

Is Gene Flow Promoting the Reversal of Pleistocene Divergence in the Mountain Chickadee (Poecile gambeli)?

G. Spellman, J. Klicka, J. Manthey, 2012, PloS one.

Genomic phylogeography of the endemic Mountain Black‐eye of Borneo (Chlorocharis emiliae): montane and lowland populations differ in patterns of Pleistocene diversification

F. Sheldon, R. Moyle, J. Manthey, 2017 .

A genome-wide assessment of stages of elevational parapatry in Bornean passerine birds reveals no introgression: implications for processes and patterns of speciation

F. Sheldon, Peter A. Hosner, R. Moyle, 2017, PeerJ.

Diversification of African tree frogs (genus Leptopelis) in the highlands of Ethiopia

S. Boissinot, J. Manthey, Jacobo Reyes-Velasco, 2018, Molecular ecology.

A genomic investigation of the putative contact zone between divergent Brown Creeper (Certhia americana) lineages: chromosomal patterns of genetic differentiation.

M. Robbins, R. Moyle, J. Manthey, 2016, Genome.

Genomic and geographic diversification of a “great-speciator” (Rhipidura rufifrons)

Luke B. Klicka, L. Joseph, J. Dumbacher, 2022, Ornithology.

Recent secondary contacts, background selection and variable recombination rates shape genomic diversity in the model species Anolis carolinensis

S. Boissinot, Y. Bourgeois, J. Manthey, 2018, bioRxiv.

Relationships of morphological groups in the northern flicker superspecies complex (Colaptes auratus & C. chrysoides)

R. Moyle, J. Manthey, M. Geiger, 2017 .

Revisiting the phylogeography, demography and taxonomy of the frog genus Ptychadena in the Ethiopian highlands with the use of genome-wide SNP data

S. Boissinot, Y. Bourgeois, J. Manthey, 2018, PloS one.

Gene flow and rapid differentiation characterize a rapid insular radiation in the southwest Pacific (Aves: Zosterops)

C. Filardi, Michael J. Andersen, C. Oliveros, 2020, Evolution; international journal of organic evolution.

Mitochondrial genomes of the bird genus Piranga: rates of sequence evolution, and discordance between mitochondrial and nuclear markers

K. Burns, R. Moyle, Luke C Campillo, 2019, Mitochondrial DNA. Part B, Resources.

Diversification in wild populations of the model organism Anolis carolinensis: A genome‐wide phylogeographic investigation

S. Boissinot, A. Lemmon, M. Tollis, 2016, Ecology and evolution.

Comparison of Target-Capture and Restriction-Site Associated DNA Sequencing for Phylogenomics: A Test in Cardinalid Tanagers (Aves, Genus: Piranga).

K. Burns, R. Moyle, Luke C Campillo, 2016, Systematic biology.

Isolation by environment in White‐breasted Nuthatches (Sitta carolinensis) of the Madrean Archipelago sky islands: a landscape genomics approach

R. Moyle, J. Manthey, 2015, Molecular ecology.

Isolation‐driven divergence: speciation in a widespread North American songbird (Aves: Certhiidae)

G. Spellman, J. Klicka, J. Manthey, 2011, Molecular ecology.

Multiple and Independent Phases of Transposable Element Amplification in the Genomes of Piciformes (Woodpeckers and Allies)

S. Boissinot, R. Moyle, J. Manthey, 2018, Genome biology and evolution.

J. Manthey, J. Girón, G. Behrends, 2023, Insectes Sociaux.

Water deficiency induces evolutionary tradeoff between stress tolerance and chemical defense allocation that may help explain range limits in plants

D. Siemens, J. Manthey, S. Matzner, 2012 .

A phylogenomic evaluation of the relationships among herons (Aves: Ardeidae)

Luke B. Klicka, K. McCracken, R. Glor, 2018 .

A test of niche centrality as a determinant of population trends and conservation status in threatened and endangered North American birds

A. Townsend Peterson, Jorge Soberón, Narayani Barve, 2015 .

RELATIONSHIP OF GENETIC DIVERSITY AND NICHE CENTRALITY: A SURVEY AND ANALYSIS

Andrés Lira-Noriega, A. Lira‐Noriega, Joseph D. Manthey, 2014, Evolution; international journal of organic evolution.

Diversification in a biodiversity hotspot: Genomic variation in the river frog Amietia nutti across the Ethiopian Highlands

S. Boissinot, J. Manthey, Jacobo Reyes-Velasco, 2017 .

Recombination rate variation shapes genomic variability of phylogeographic structure in a widespread North American songbird (Aves: Certhia americana)

G. Spellman, J. Manthey, 2023, bioRxiv.

Chromosomal patterns of diversity and differentiation in creepers: a next-gen phylogeographic investigation of Certhia americana

G. Spellman, J. Klicka, J. Manthey, 2015, Heredity.

Landscape Level Patterns of Genetic Diversity of Bat Species of Greatest Conservation Need in Louisiana

D. Ray, R. Stevens, J. Manthey, 2022 .

Library preparation method and DNA source influence endogenous DNA recovery from 100‐year‐old avian museum specimens

B. Marks, J. Manthey, Amie E. Settlecowski, 2023, bioRxiv.

Cryptic diversity in a widespread North American songbird: phylogeography of the Brown Creeper (Certhia americana).

G. Spellman, J. Klicka, J. Manthey, 2011, Molecular phylogenetics and evolution.

Genomic differentiation in an endemic Philippine genus (Aves: Sarcophanops) owing to geographical isolation on recently disassociated islands.

R. C. Thomson, Peter A. Hosner, R. Moyle, 2020, Biological journal of the Linnean Society. Linnean Society of London.

Isolation by environment in White‐breasted Nuthatches (Sitta carolinensis) of the Madrean Archipelago sky islands: a landscape genomics approach

R. Moyle, J. Manthey, 2015, Molecular ecology.