A. Lucius

发表

General methods for analysis of sequential "n-step" kinetic mechanisms: application to single turnover kinetics of helicase-catalyzed DNA unwinding.

T. Lohman, C. J. Fischer, A. Lucius, 2003, Biophysical journal.

Molecular mechanism of polypeptide translocation catalyzed by the Escherichia coli ClpA protein translocase.

A. Lucius, Burki Rajendar, 2010, Journal of molecular biology.

Avidity for Polypeptide Binding by Nucleotide-Bound Hsp104 Structures.

Elizabeth C. Duran, J. Shorter, Meredith E. Jackrel, 2017, Biochemistry.

Conformational plasticity of the ClpAP AAA+ protease couples protein unfolding and proteolysis

J. Shorter, A. Thwin, D. Southworth, 2020, Nature Structural & Molecular Biology.

Kinetic Analysis of AAA+ Translocases by Combined Fluorescence and Anisotropy Methods.

A. Lucius, N. W. Scull, 2020, Biophysical journal.

Examination of the nucleotide‐linked assembly mechanism of E. coli ClpA

A. Lucius, Elizabeth C Duran, 2019, Protein science : a publication of the Protein Society.

Conformational plasticity of the ClpAP AAA+ protease couples protein unfolding and proteolysis

J. Shorter, A. Thwin, D. Southworth, 2019, Nature Structural & Molecular Biology.

E. coli ClpA catalyzed polypeptide translocation is allosterically controlled by the protease ClpP.

Justin M. Miller, A. Lucius, JiaBei Lin, 2013, Journal of molecular biology.

The N-terminal domain of the A12.2 subunit stimulates RNA polymerase I transcription elongation.

D. Schneider, A. Lucius, Catherine E. Scull, 2021, Biophysical journal.

Examination of the dynamic assembly equilibrium for E. coli ClpB

A. Lucius, JiaBei Lin, 2015, Proteins.

Escherichia coli ClpB is a non-processive polypeptide translocase

Justin M. Miller, Elizabeth C. Duran, A. Lucius, 2015, The Biochemical journal.

Examination of polypeptide substrate specificity for Escherichia coli ClpB

A. Lucius, JiaBei Lin, Tao Li, 2015, Proteins.

ATPγS competes with ATP for binding at Domain 1 but not Domain 2 during ClpA catalyzed polypeptide translocation.

Justin M. Miller, A. Lucius, 2014, Biophysical chemistry.

Synthesis and structure activity relationship studies of novel Staphylococcus aureus Sortase A inhibitors.

S. Velu, B. Chenna, A. Glover, 2010, European journal of medicinal chemistry.

Quantifying the influence of 5'-RNA modifications on RNA polymerase I activity.

D. Schneider, A. Lucius, F. Appling, 2017, Biophysical chemistry.

Crystal structures of Hsp104 N-terminal domains from Saccharomyces cerevisiae and Candida albicans suggest the mechanism for the function of Hsp104 in dissolving prions.

Peng Wang, Jingzhi Li, B. Sha, 2017, Acta crystallographica. Section D, Structural biology.

Uncovering the mechanisms of transcription elongation by eukaryotic RNA polymerases I, II, and III

D. Schneider, A. Lucius, Ruth Q. Jacobs, 2022, iScience.

Journal Pre-proof Uncovering the mechanisms of transcription elongation by eukaryotic RNA polymerases I, II, and III

D. Schneider, A. Lucius, Ruth Q. Jacobs, 2022 .

The A12.2 Subunit Is an Intrinsic Destabilizer of the RNA Polymerase I Elongation Complex.

D. Schneider, A. Lucius, Catherine E. Scull, 2018, Biophysical journal.

Correlating the Activity of Rhodium(I)-Phosphite-Lariat Ether Styrene Hydroformylation Catalysts with Alkali Metal Cation Binding through NMR Spectroscopic Titration Methods

G. M. Gray, A. Lucius, Ethan C. Cagle, 2016 .

Generally Applicable NMR Titration Methods for the Determination of Equilibrium Constants for Coordination Complexes: Syntheses and Characterizations of Metallacrown Ethers with α,ω-Bis(phosphite)-polyether Ligands and Determination of Equilibrium Binding Constants to Li+

G. M. Gray, A. Lucius, Samuel B. Owens, 2011 .

Hsp104 and Potentiated Variants Can Operate as Distinct Nonprocessive Translocases.

J. Shorter, L. Castellano, Meredith E. Jackrel, 2019, Biophysical journal.

Metallathiacrown Ethers: Synthesis and Characterization of Transition-Metal Complexes Containing α,ω-Bis(phosphite)-Polythioether Ligands and an Evaluation of Their Soft Metal Binding Capabilities

G. M. Gray, A. Lucius, Justin R. Martin, 2015 .

RNA Polymerase I Is Uniquely Vulnerable to the Small-Molecule Inhibitor BMH-21

M. Laiho, D. Schneider, A. Lucius, 2022, Cancers.

A Novel Assay for RNA Polymerase I Transcription Elongation Sheds Light on the Evolutionary Divergence of Eukaryotic RNA Polymerases.

D. Schneider, A. Lucius, Catherine E. Scull, 2019, Biochemistry.

Transient-State Kinetic Analysis of the RNA Polymerase I Nucleotide Incorporation Mechanism.

D. Schneider, A. Lucius, F. Appling, 2015, Biophysical journal.

Transient-state Kinetic Analysis of Multi-nucleotide Addition Catalyzed by RNA Polymerase I.

D. Schneider, A. Lucius, Zachariah M. Ingram, 2021, Biophysical journal.

Downstream sequence-dependent RNA cleavage and pausing by RNA polymerase I

D. Schneider, A. Lucius, Catherine E. Scull, 2019, The Journal of Biological Chemistry.

Multisubunit RNA Polymerase Cleavage Factors Modulate the Kinetics and Energetics of Nucleotide Incorporation: An RNA Polymerase I Case Study.

D. Schneider, A. Lucius, F. Appling, 2017, Biochemistry.

Multi-start Evolutionary Nonlinear OpTimizeR (MENOTR): A hybrid parameter optimization toolbox.

David J. Schneider, A. Lucius, N. W. Scull, 2021, Biophysical chemistry.

Defining the divergent enzymatic properties of RNA polymerases I and II

D. Schneider, A. Lucius, Ruth Q. Jacobs, 2020, The Journal of biological chemistry.

Examination of ClpB Quaternary Structure and Linkage to Nucleotide Binding.

A. Lucius, JiaBei Lin, 2016, Biochemistry.

Analysis of Linked Equilibria.

A. Lucius, JiaBei Lin, 2015, Methods in enzymology.

Comparative Analysis of the Structure and Function of AAA+ Motors ClpA, ClpB, and Hsp104: Common Threads and Disparate Functions

Elizabeth C. Duran, A. Lucius, C. Weaver, 2017, Front. Mol. Biosci..

AAA+ proteins: one motor, multiple ways to work.

J. Shorter, A. Lucius, JiaBei Lin, 2022, Biochemical Society transactions.

DNA helicases, motors that move along nucleic acids: Lessons from the SF1 helicase superfamily

G. Waksman, T. Lohman, C. J. Fischer, 2003 .

DNA unwinding step-size of E. coli RecBCD helicase determined from single turnover chemical quenched-flow kinetic studies.

T. Lohman, A. Vindigni, R. Gregorian, 2002, Journal of molecular biology.

Examination of the polypeptide substrate specificity for Escherichia coli ClpA.

A. Lucius, Tao Li, 2013, Biochemistry.

Effects of temperature and ATP on the kinetic mechanism and kinetic step-size for E.coli RecBCD helicase-catalyzed DNA unwinding.

T. Lohman, A. Lucius, 2004, Journal of molecular biology.

Fluorescence stopped-flow studies of single turnover kinetics of E.coli RecBCD helicase-catalyzed DNA unwinding.

T. Lohman, C. J. Wong, A. Lucius, 2004, Journal of molecular biology.

The cofactor-dependent folding mechanism of Drosophila cryptochrome revealed by single-molecule pulling experiments

Rodrigo A. Maillard, M. Tadesse, B. Crane, 2023, Nature Communications.

Characterization of Calmodulin–Fas Death Domain Interaction: An Integrated Experimental and Computational Study

J. McDonald, T. Zhou, A. Lucius, 2014, Biochemistry.

Energetics of DNA end binding by E.coli RecBC and RecBCD helicases indicate loop formation in the 3'-single-stranded DNA tail.

T. Lohman, C. J. Wong, A. Lucius, 2005, Journal of molecular biology.

The Escherichia coli ClpA molecular chaperone self-assembles into tetramers.

A. Lucius, P. Veronese, Ryan P Stafford, 2009, Biochemistry.

Identification of novel inhibitors of bacterial surface enzyme Staphylococcus aureus Sortase A.

S. Narayana, S. Velu, B. Chenna, 2008, Bioorganic & medicinal chemistry letters.

ATP hydrolysis inactivating Walker B mutation perturbs E. coli ClpA self-assembly energetics in the absence of nucleotide.

Elizabeth C. Duran, A. Lucius, 2018, Biophysical chemistry.

Polyphosphonates as ionic conducting polymers

I. Popov, S. Foulger, Victoria L. Stanford, 2020, Journal of Polymer Science.

Implementing and Evaluating a Chemistry Course in Chemical Ethics and Civic Responsibility

A. Lucius, C. McClure, 2010 .

Application of the sequential n-step kinetic mechanism to polypeptide translocases.

Justin M. Miller, A. Lucius, Burki Rajendar, 2011, Methods in enzymology.

Escherichia coli DnaK Allosterically Modulates ClpB between High- and Low-Peptide Affinity States.

Elizabeth C. Duran, C. Durie, A. Lucius, 2018, Biochemistry.

Hsp104 and Potentiated Variants Can Operate as Distinct Nonprocessive Translocases.

J. Shorter, L. Castellano, Meredith E. Jackrel, 2019, Biophysical journal.

Defining the divergent enzymatic properties of RNA polymerases I and II.

D. Schneider, A. Lucius, Ruth Q. Jacobs, 2020, The Journal of biological chemistry.

Protocol for monitoring and analyzing single nucleotide incorporation by S. cerevisiae RNA polymerases

D. Schneider, A. Lucius, Ruth Q. Jacobs, 2023, STAR protocols.

Activity of E. coli ClpA bound by nucleoside diphosphates and triphosphates.

A. Lucius, Burki Rajendar, P. K. Veronese, 2011, Journal of molecular biology.

The A12.2 subunit plays an integral role in pyrophosphate release of RNA Polymerase I.

D. Schneider, A. Lucius, Ruth Q. Jacobs, 2023, Journal of molecular biology.

Quantifying the impact of initial RNA primer length on nucleotide addition by RNA polymerase I.

D. Schneider, A. Lucius, Stephanie L Cooper, 2023, Biophysical chemistry.

Reversible kinetics in multi-nucleotide addition catalyzed by S. cerevisiae RNA Polymerase II reveal slow pyrophosphate release.

D. Schneider, A. Lucius, Ruth Q. Jacobs, 2024, Journal of molecular biology.

Binding of six nucleotide cofactors to the hexameric helicase RepA protein of plasmid RSF1010. 1. Direct evidence of cooperative interactions between the nucleotide-binding sites of a hexameric helicase.

M. Jezewska, W. Bujalowski, A. Lucius, 2005, Biochemistry.

Binding of six nucleotide cofactors to the hexameric helicase RepA protein of plasmid RSF1010. 2. Base specificity, nucleotide structure, magnesium, and salt effect on the cooperative binding of the cofactors.

M. Jezewska, W. Bujalowski, A. Lucius, 2005, Biochemistry.

DNA polymerase X from African swine fever virus: quantitative analysis of the enzyme-ssDNA interactions and the functional structure of the complex.

M. Jezewska, W. Bujalowski, A. Lucius, 2006, Journal of molecular biology.