C. Herman

发表

Microbial Genetic Composition Tunes Host Longevity

P. Sivaramakrishnan, Meng C. Wang, G. Du, 2017, Cell.

Directed Evolution of Substrate-Optimized GroEL/S Chaperonins

Jonathan S. Weissman, Carol A. Gross, J. Weissman, 2002, Cell.

Revisiting Bistability in the Lysis/Lysogeny Circuit of Bacteriophage Lambda

J. A. Halliday, I. Golding, Michael Bednarz, 2014, PloS one.

Negative feedback in genetic circuits confers evolutionary resilience and capacitance.

Shivas R. Amin, O. Lichtarge, Panagiotis Katsonis, 2014, Cell reports.

Evolutionary action of mutations reveals antimicrobial resistance genes in Escherichia coli

O. Lichtarge, S. Rosenberg, Panagiotis Katsonis, 2022, Nature Communications.

RNA polymerase inaccuracy underlies SARS-CoV-2 variants and vaccine heterogeneity

Brendan F. Kohrn, O. Lichtarge, Scott Kennedy, 2022, Research square.

The HﬂB Protease of Escherichia coli Degrades Its Inhibitor (cid:108) cIII

P. Bouloc, R. D'ari, C. Herman, 1996 .

Telomere dysfunction impairs intestinal differentiation and predisposes to diet-induced colitis

J. A. Halliday, E. Sahin, N. Oezguen, 2022, bioRxiv.

CRISPR-FRT targets shared sites in a knock-out collection for off-the-shelf genome editing

O. Lichtarge, N. Verstraeten, J. Michiels, 2018, Nature Communications.

Super DksAs: substitutions in DksA enhancing its effects on transcription initiation

J. A. Halliday, R. Gourse, W. Ross, 2009, The EMBO journal.

DksA and ppGpp Regulate the σS Stress Response by Activating Promoters for the Small RNA DsrA and the Anti-Adapter Protein IraP

J. A. Halliday, R. Gourse, C. Herman, 2017, Journal of bacteriology.

Degradation of ao32, the heat shock regulator in Escherichia coli, is governed by HfIB

P. Bouloc, R. D'ari, C. Herman, 2005 .

Characterization of a Novel RNA Polymerase Mutant That Alters DksA Activity

J. A. Halliday, P. Sivaramakrishnan, R. Lua, 2013, Journal of bacteriology.

ATP-dependent Proteases Differ Substantially in Their Ability to Unfold Globular Proteins*

D. Kraut, A. Matouschek, Prakash Koodathingal, 2009, The Journal of Biological Chemistry.

Transcriptional Infidelity Promotes Heritable Phenotypic Change in a Bistable Gene Network

J. A. Halliday, Fumio Yatagai, P. Burns, 2009, PLoS biology.

TraR, a Homolog of a RNAP Secondary Channel Interactor, Modulates Transcription

Abha Choudhary, K. Potrykus, M. Cashel, 2009, PLoS genetics.

Fluorescent fusions of the N protein of phage Mu label DNA damage in living cells.

Lei Li, Jun Xia, C. Shee, 2018, DNA repair.

Holliday junction trap shows how cells use recombination and a junction-guardian role of RecQ helicase

J. A. Halliday, Jun Xia, S. Rosenberg, 2016, Science Advances.

Heritable Change Caused by Transient Transcription Errors

J. A. Halliday, A. Gordon, Dominik Satory, 2013, PLoS genetics.

A chaperone network controls the heat shock response in E. coli.

Carol A Gross, C. Gross, Christophe Herman, 2004, Genes & development.

Degradation of carboxy-terminal-tagged cytoplasmic proteins by the Escherichia coli protease HflB (FtsH).

P. Bouloc, G. Walker, R. D'ari, 1998, Genes & development.

DksA involvement in transcription fidelity buffers stochastic epigenetic change

J. A. Halliday, I. Golding, A. Gordon, 2015, Nucleic acids research.

Cooperativity of Negative Autoregulation Confers Increased Mutational Robustness

Olivier Lichtarge, Rhonald C. Lua, O. Lichtarge, 2016, Physical review letters.

] Prion

S. Lindquist, C. Herman, L. Rokeach, 2022 .

Using ultra-high carbon dioxide levels enhances plantlet growth in vitro

B. Tisserat, R. Bothast, C. Herman, 1997 .

Degradation of sigma 32, the heat shock regulator in Escherichia coli, is governed by HflB.

P. Bouloc, R. D'ari, C. Herman, 1995, Proceedings of the National Academy of Sciences of the United States of America.

Separation of Recombination and SOS Response in Escherichia coli RecA Suggests LexA Interaction Sites

Olivier Lichtarge, Rhonald Lua, Anbu K. Adikesavan, 2011, PLoS genetics.

Regulon and promoter analysis of the E. coli heat-shock factor, sigma32, reveals a multifaceted cellular response to heat stress.

Virgil A Rhodius, Carol A Gross, C. Gross, 2006, Genes & development.

Transcription fidelity: New paradigms in epigenetic inheritance, genome instability and disease.

J. A. Halliday, A. Gordon, C. Herman, 2019, DNA repair.

Removal of 8-oxo-GTP by MutT hydrolase is not a major contributor to transcriptional fidelity

J. A. Halliday, I. Golding, A. Gordon, 2014, Nucleic acids research.

Gamblers: An Antibiotic-Induced Evolvable Cell Subpopulation Differentiated by Reactive-Oxygen-Induced General Stress Response.

R. Austin, Jun Xia, S. Rosenberg, 2019, Molecular cell.

DksA guards elongating RNA polymerase against ribosome-stalling-induced arrest.

P. Sivaramakrishnan, R. Landick, Yan Zhang, 2014, Molecular cell.

The Transcription Factor DksA Prevents Conflicts between DNA Replication and Transcription Machinery

J. A. Halliday, Yan Zhang, Jue D. Wang, 2010, Cell.

Regulation of the heat‐shock response depends on divalent metal ions in an hfIB mutant of Escherichia coli

P. Bouloc, R. D'ari, S. Lecat, 1995, Molecular microbiology.

How Acts of Infidelity Promote DNA Break Repair: Collision and Collusion Between DNA Repair and Transcription

J. A. Halliday, P. Sivaramakrishnan, A. Gordon, 2018, BioEssays : news and reviews in molecular, cellular and developmental biology.

Epigenetic switches: can infidelity govern fate in microbes?

J. A. Halliday, A. Gordon, Dominik Satory, 2011, Current opinion in microbiology.

Transcription infidelity and genome integrity: the parallax view

J. A. Halliday, P. Sivaramakrishnan, A. Gordon, 2018, Transcription.

Lost in transcription: transient errors in information transfer.

J. A. Halliday, A. Gordon, Dominik Satory, 2015, Current opinion in microbiology.

Conjugation’s Toolkit: the Roles of Nonstructural Proteins in Bacterial Sex

C. Herman, Matthew Cooke, 2023, Journal of bacteriology.

The σE stress response is required for stress-induced mutation and amplification in Escherichia coli

Janet L. Gibson, S. Rosenberg, L. Frost, 2010, Molecular microbiology.

Recruitment of host ATP-dependent proteases by bacteriophage lambda.

A. Oppenheim, O. Kobiler, Oren Kobiler, 2004, Journal of structural biology.

The HflB protease of Escherichia coli degrades its inhibitor lambda cIII

P. Bouloc, R. D'ari, C. Herman, 1997, Journal of bacteriology.

Cell growth and lambda phage development controlled by the same essential Escherichia coli gene, ftsH/hflB.

P. Bouloc, Koreaki Ito, René Thomas, 1993, Proceedings of the National Academy of Sciences of the United States of America.

Activation of the σE-Dependent Stress Pathway by Conjugative TraR May Anticipate Conjugational Stress

R. Gourse, W. Ross, Matthew D. Blankschien, 2014, Journal of bacteriology.

Proteolysis and chaperones: the destruction/reconstruction dilemma.

R. D'ari, C. Herman, 1998, Current opinion in microbiology.

The transcription fidelity factor GreA impedes DNA break repair

J. A. Halliday, P. Sivaramakrishnan, I. Golding, 2017, Nature.

ppGpp and RNA-Polymerase Backtracking Guide Antibiotic-Induced Mutable Gambler Cells

S. Rosenberg, John P. Pribis, P. Hastings, 2022, bioRxiv.

Gamblers: an Antibiotic-induced Evolvable Cell Subpopulation Differentiated by Reactive-oxygen-induced General Stress Response

R. Austin, Jun Xia, S. Rosenberg, 2018, bioRxiv.

Microbial Genetic Composition Tunes Host Longevity

P. Sivaramakrishnan, Meng C. Wang, Antons Sizovs, 2018, Cell.

Fine-tuning of the Escherichia coli sigmaE envelope stress response relies on multiple mechanisms to inhibit signal-independent proteolysis of the transmembrane anti-sigma factor, RseA.

C. Gross, Rachna Chaba, V. Rhodius, 2004, Genes & development.

Engineered proteins detect spontaneous DNA breakage in human and bacterial cells

J. A. Halliday, C. Shee, Janet L. Gibson, 2013, eLife.

Modulation of RNA polymerase processivity affects double-strand break repair in the presence of a DNA-end binding protein

J. A. Halliday, P. Sivaramakrishnan, I. Artsimovitch, 2022, bioRxiv.

RNAP Secondary‐Channel Interactors in Escherichia Coli: Makers and Breakers of Genome Stability

P. Sivaramakrishnan, C. Herman, 2016 .

Lack of a robust unfoldase activity confers a unique level of substrate specificity to the universal AAA protease FtsH.

C. Gross, A. Matouschek, C. Lu, 2003, Molecular cell.

The mitochondrial permeability transition: the brain's point of view.

V. Pinelis, B. Kristal, J. Dubinsky, 1999, Biochemical Society Symposium.

Drugging evolution of antibiotic resistance at a regulatory network hub

S. Rosenberg, M. Costa-Mattioli, John P. Pribis, 2023, Science advances.

Escherichia coli Metabolite Profiling Leads to the Development of an RNA Interference Strain for Caenorhabditis elegans

P. Sivaramakrishnan, Meng C. Wang, Leng Han, 2019, G3: Genes, Genomes, Genetics.

CRISPR-FRT targets shared sites in a knock-out collection for off-the-shelf genome editing

O. Lichtarge, N. Verstraeten, J. Michiels, 2018, Nature Communications.

Microbial Genetic Composition Tunes Host Longevity

P. Sivaramakrishnan, Meng C. Wang, G. Du, 2018, Cell.

The σE stress response is required for stress-induced mutation and amplification in Escherichia coli

S. Rosenberg, L. Frost, R. Galhardo, 2010, Molecular microbiology.