Alistair G. Rust

发表

Prediction of Binding Sites in the Mouse Genome Using Support Vector Machines

Neil Davey, Mark Robinson, Yi Sun, 2008, ICANN.

Improving Transcription Factor Binding Site Predictions by Using Randomised Negative Examples

Neil Davey, Mark Robinson, Yi Sun, 2012, IPCAT.

Using Varying Negative Examples to Improve Computational Predictions of Transcription Factor Binding Sites

Neil Davey, Mark Robinson, Yi Sun, 2012, EANN.

Using Feature Selection Filtering Methods for Binding Site Predictions

Neil Davey, Mark Robinson, Yi Sun, 2006, 2006 5th IEEE International Conference on Cognitive Informatics.

Combining experts in order to identify binding sites in yeast and mouse genomic data

Neil Davey, Mark Robinson, Yi Sun, 2008, Neural Networks.

Developmental evolution of dendritic morphology in a multi-compartmental neuron model

Roger Adams, Alistair G. Rust, A. Rust, 1999 .

Image redundancy reduction for neural network classification using discrete cosine transforms

Alistair G. Rust, Hamid Bolouri, Zhengjun Pan, 2000, Proceedings of the IEEE-INNS-ENNS International Joint Conference on Neural Networks. IJCNN 2000. Neural Computing: New Challenges and Perspectives for the New Millennium.

Towards Computational Neural Systems through Developmental Evolution

Rod Adams, Alistair G. Rust, Hamid Bolouri, 2001, Emergent Neural Computational Architectures Based on Neuroscience.

Using Real-Valued Meta Classifiers to Integrate and Contextualize Binding Site Predictions

Neil Davey, Mark Robinson, Yi Sun, 2007, ICANNGA.

Ensembl 2002: accommodating comparative genomics

Alistair G. Rust, Heikki Lehväslaiho, Eduardo Eyras, 2003, Nucleic Acids Res..

Integrating Binding Site Predictions Using Non-linear Classification Methods

Neil Davey, Mark Robinson, Yi Sun, 2004, Deterministic and Statistical Methods in Machine Learning.

Integrating genomic binding site predictions using real-valued meta classifiers

Neil Davey, Mark Robinson, Yi Sun, 2008, Neural Computing and Applications.

Uncovering a Macrophage Transcriptional Program by Integrating Evidence from Motif Scanning and Expression Dynamics

Bin Li, Jared C. Roach, Alistair G. Rust, 2008, PLoS Comput. Biol..

Cake: a bioinformatics pipeline for the integrated analysis of somatic variants in cancer genomes

Alistair G. Rust, David J. Adams, Carla Daniela Robles-Espinoza, 2013, Bioinform..

Predicting Binding Sites in the Mouse Genome

Neil Davey, Mark Robinson, Yi Sun, 2007, Sixth International Conference on Machine Learning and Applications (ICMLA 2007).

Molecular self-organisation in a developmental model for the evolution of large-scale artificial neural networks

Roger Adams, Alistair G. Rust, Hamid Bolouri, 1998 .

Molecular Self-Organization in the Development Model for the Evolution of Large-scale Artificial Neural Networks

Rod Adams, Alistair G. Rust, Hamid Bolouri, 1998, ICONIP.

Using pre & post-processing methods to improve binding site predictions

Neil Davey, Mark Robinson, Yi Sun, 2009, Pattern Recognit..

Mutational Genomics for Cancer Pathway Discovery

Marcel J. T. Reinders, Alistair G. Rust, Lodewyk F. A. Wessels, 2013, PRIB.

Improving Computational Predictions of Cis- Regulatory Binding Sites

Neil Davey, Mark Robinson, Yi Sun, 2006, Pacific Symposium on Biocomputing.

Effect of Using Varying Negative Examples in Transcription Factor Binding Site Predictions

Neil Davey, Mark Robinson, Yi Sun, 2011, EvoBio.

Integrating binding site predictions using meta classification methods

Neil Davey, Mark Robinson, Yi Sun, 2005 .

Using sampling methods to improve binding site predictions

Neil Davey, Mark Robinson, Yi Sun, 2006, ESANN.

A finite state automaton model for multi-neuron simulations

Rod Adams, Alistair G. Rust, Hamid Bolouri, 2002, Neurocomputing.

Transcription Binding Site Prediction Using Markov Models

Walter R. Gilks, Mark Robinson, Alistair G. Rust, 2006, J. Bioinform. Comput. Biol..

The Ensembl genome database project

Philip Lijnzaad, Alistair G. Rust, Matthew R. Pocock, 2002, Nucleic Acids Res..

Using Randomised Vectors in Transcription Factor Binding Site Predictions

Neil Davey, Mark Robinson, Yi Sun, 2010, 2010 Ninth International Conference on Machine Learning and Applications.

Chromatin Landscapes of Retroviral and Transposon Integration Profiles

Alistair G. Rust, Lodewyk F. A. Wessels, Jeroen de Ridder, 2014, PLoS genetics.

Evolutionary neural topiary: growing and sculpting artifical neurons to order

Alistair G. Rust, Hamid Bolouri, Roger Adams, 2000 .

A FOXO3/IRF7 gene regulatory circuit limits inflammatory sequelae of antiviral responses

Alistair G. Rust, Alexander V. Ratushny, Frank Schmitz, 2012, Nature.

Role of the transcription factor C/EBPδ in a regulatory circuit that discriminates between transient and persistent Toll-like receptor 4-induced signals

Alistair G. Rust, Stephen A. Ramsey, Ilya Shmulevich, 2009, Nature Immunology.