Nathan A Baker

发表

Improvements to the APBS biomolecular solvation software suite

Jiahui Chen, Guo-Wei Wei, Nathan A. Baker, 2017, Protein science : a publication of the Protein Society.

Numerical calculation of protein-ligand binding rates through solution of the Smoluchowski equation using smoothed particle hydrodynamics

Nathan A. Baker, Michael D. Daily, Nathan A Baker, 2015, BMC biophysics.

Informatics and standards for nanomedicine technology.

Martin Fritts, Nathan A. Baker, Mark D. Hoover, 2011, Wiley interdisciplinary reviews. Nanomedicine and nanobiotechnology.

Physicochemical signatures of nanoparticle-dependent complement activation.

Kilian Q. Weinberger, Nathan A. Baker, Zhixiang Xu, 2014, Computational science & discovery.

Poisson-Boltzmann Methods for Biomolecular Electrostatics

Nathan A. Baker, Nathan A Baker, 2004, Numerical Computer Methods, Part D.

Improving implicit solvent simulations: a Poisson-centric view.

Nathan A. Baker, Nathan A Baker, 2005, Current opinion in structural biology.

NIH cancer Biomedical Informatics Grid (caBIG®) ICR Nanotechnology Working Group

Nathan A Baker, 2010 .

Bayesian model aggregation for ensemble‐based estimates of protein pKa values

Nathan A. Baker, Luke J. Gosink, Nathan A Baker, 2014, Proteins.

Application of a hemolysis assay for analysis of complement activation by perfluorocarbon nanoparticles.

Nathan A. Baker, Nathan A Baker, Gregory M Lanza, 2014, Nanomedicine : nanotechnology, biology, and medicine.

Assessing implicit models for nonpolar mean solvation forces: the importance of dispersion and volume terms.

Nathan A. Baker, Nathan A Baker, Jason A Wagoner, 2006, Proceedings of the National Academy of Sciences of the United States of America.

Optimizing the Poisson Dielectric Boundary with Explicit Solvent Forces and Energies: Lessons Learned with Atom-Centered Dielectric Functions.

Nathan A. Baker, Jessica M J Swanson, Nathan A Baker, 2007, Journal of chemical theory and computation.

On the development of protein pKa calculation algorithms

Nathan A. Baker, Damien Farrell, Jens Erik Nielsen, 2011, Proteins.

Electrostatic properties of cowpea chlorotic mottle virus and cucumber mosaic virus capsids

Joanna Trylska, Nathan A. Baker, Florence Tama, 2006, Biopolymers.

ISA-TAB-Nano: A Specification for Sharing Nanomaterial Research Data in Spreadsheet-based Format

Martin Fritts, Nathan A. Baker, Nathan A Baker, 2013, BMC Biotechnology.

iAPBS: a programming interface to Adaptive Poisson-Boltzmann Solver (APBS).

Nathan A. Baker, J Andrew McCammon, Robert Konecny, 2012, Computational science & discovery.

Polarizable atomic multipole solutes in a Poisson-Boltzmann continuum.

Nathan A. Baker, Jay W Ponder, Nathan A Baker, 2007, The Journal of chemical physics.

Binding of aminoglycoside antibiotics to the small ribosomal subunit: a continuum electrostatics investigation.

J Andrew McCammon, Nathan A Baker, Simpson Joseph, 2002, Journal of the American Chemical Society.

Finite element analysis of the time-dependent Smoluchowski equation for acetylcholinesterase reaction rate calculations.

Nathan A. Baker, Stephen D. Bond, J Andrew McCammon, 2007, Biophysical journal.

Electrostatic interactions.

Nathan A. Baker, J Andrew McCammon, Nathan A Baker, 2003, Methods of biochemical analysis.

Probing 3'-ssDNA loop formation in E. coli RecBCD/RecBC-DNA complexes using non-natural DNA: a model for "Chi" recognition complexes.

Tao Ju, Nathan A. Baker, Nathan A Baker, 2006, Journal of molecular biology.

Bridging implicit and explicit solvent approaches for membrane electrostatics.

Jung-Hsin Lin, Nathan A. Baker, J Andrew McCammon, 2002, Biophysical journal.

Molecular dynamics simulation of the Escherichia coli NikR protein: equilibrium conformational fluctuations reveal interdomain allosteric communication pathways.

Nathan A. Baker, Nathan A Baker, M. Bradley, 2008, Journal of molecular biology.

Bayesian Model Averaging for Ensemble-Based Estimates of Solvation-Free Energies.

Nathan A. Baker, Luke J. Gosink, David L Mobley, 2016, The journal of physical chemistry. B.

Smoothed dissipative particle dynamics model for mesoscopic multiphase flows in the presence of thermal fluctuations.

Nathan A. Baker, Alexandre M Tartakovsky, Huan Lei, 2015, Physical review. E.

Biomolecular electrostatics and solvation: a computational perspective

Nathan A. Baker, Jaehun Chun, Jiajing Zhang, 2012, Quarterly Reviews of Biophysics.

Electrostatic interaction between RNA and protein capsid in cowpea chlorotic mottle virus simulated by a coarse‐grain RNA model and a Monte Carlo approach

Nathan A. Baker, J Andrew McCammon, Robert Konecny, 2004, Biopolymers.

Atomic Radius and Charge Parameter Uncertainty in Biomolecular Solvation Energy Calculations.

Nathan A. Baker, David L Mobley, Huan Lei, 2017, Journal of chemical theory and computation.

Variational approach for nonpolar solvation analysis.

Shan Zhao, Nathan A. Baker, Jaehun Chun, 2012, The Journal of chemical physics.