V. Sychrovský

发表

Influence of the O-phosphorylation of serine, threonine and tyrosine in proteins on the amidic 15N chemical shielding anisotropy tensors

J. Koča, R. Boelens, V. Sklenar, 2013, Journal of biomolecular NMR.

Exploring the Structure of a DNA Hairpin with the Help of NMR Spin−Spin Coupling Constants: An Experimental and Quantum Chemical Investigation

D. Cremer, V. Sklenar, L. Žídek, 2002 .

Hg II /Ag I -mediated base pairs and their NMR spectroscopic studies

Kyoko Furuita, C. Kojima, A. Ono, 2016 .

Structures, physicochemical properties, and applications of T-Hg(II)-T, C-Ag(I)-C, and other metallo-base-pairs.

J. Kondo, A. Ono, Yoshiyuki Tanaka, 2015, Chemical communications.

Limits in Proton Nuclear Singlet-State Lifetimes Measured with para-Hydrogen-Induced Polarization.

A. Jerschow, J. Canary, V. Sychrovský, 2016, Chemphyschem : a European journal of chemical physics and physical chemistry.

Determination of the configuration in six-membered saturated heterocycles (N, P, S, Se) and their oxidation products using experimental and calculated NMR chemical shifts

R. Pohl, I. Císařová, M. Dračínský, 2014 .

Pyramidalization of the glycosidic nitrogen provides the way for efficient cleavage of the N-glycosidic bond of 8-OxoG with the hOGG1 DNA repair protein.

Yoshiyuki Tanaka, V. Sychrovský, L. Trantírek, 2012, The journal of physical chemistry. B.

Quantitative Analysis of Nanorough Hydrogenated Si(111) Surfaces through Vibrational Spectral Assignment by Periodic DFT Calculations

C. Ballif, J. Zemen, S. De Wolf, 2022, The Journal of Physical Chemistry C.

Additive transport in DNA molecular circuits

D. Řeha, V. Kolivoška, M. Hromadová, 2022, Journal of Materials Chemistry C.

Brillouin-Wigner Perturbation Theory as a Possible more Effective Alternative to Many-Body Rayleigh-Schrodinger Perturbation Theory and Coupled Cluster Theory

J. Urban, P. Babinec, V. Sychrovský, 1995 .

Structure and dynamics of the ApA, ApC, CpA, and CpC RNA dinucleoside monophosphates resolved with NMR scalar spin-spin couplings.

B. Schneider, J. Šponer, M. Buděšínský, 2009, The journal of physical chemistry. B.

Probabilistic Interpretation of NMR J-Couplings Determines BI-BII State Equilibria in DNA.

P. Jurečka, Marie Zgarbová, V. Sychrovský, 2022, Journal of chemical theory and computation.

Effect of local sugar and base geometry on 13C and 15N magnetic shielding anisotropy in DNA nucleosides

B. Schneider, J. Šponer, V. Sychrovský, 2008, Journal of biomolecular NMR.

Synthesis of locked cyclohexene and cyclohexane nucleic acids (LCeNA and LCNA) with modified adenosine units.

Jiří Rybáček, M. Dračínský, I. Rosenberg, 2015, Organic & biomolecular chemistry.

Theoretical calculation of the NMR spin-spin coupling constants and the NMR shifts allow distinguishability between the specific direct and the water-mediated binding of a divalent metal cation to guanine.

J. Šponer, P. Hobza, V. Sychrovský, 2004, Journal of the American Chemical Society.

29Si–13C spin–spin couplings over Si–O–Carom link

J. Sýkora, J. Schraml, V. Sychrovský, 2006, Magnetic resonance in chemistry : MRC.

Raman spectroscopic detection of the T-HgII-T base pair and the ionic characteristics of mercury

P. Bouř, A. Ono, Takuya Kawamura, 2012, Nucleic acids research.

Quantum Chemical Calculations of NMR Parameters

Wolfgang Schöfberger, Vladimír Sychrovský, Lukáš Trantírek, 2006 .

The Ad‐MD method to calculate NMR shift including effects due to conformational dynamics: The 31P NMR shift in DNA

P. Jurečka, Marie Zgarbová, M. Buděšínský, 2021, J. Comput. Chem..

Correlating the 31P NMR chemical shielding tensor and the 2J(P,C) spin-spin coupling constants with torsion angles ζ and α in the backbone of nucleic acids.

M. Straka, L. Benda, V. Sychrovský, 2012, The journal of physical chemistry. B.

Ascorbigen A—NMR identification

J. Sýkora, P. Dobrev, J. Schraml, 2019, Magnetic resonance in chemistry : MRC.

Probing the flexibility of internal rotation in silylated phenols with the NMR scalar spin-spin coupling constants.

L. Benda, A. Prokop, J. Schraml, 2008, The journal of physical chemistry. A.

Nuclear magnetic resonance spin–spin coupling constants from coupled perturbed density functional theory

Jürgen Gräfenstein, Dieter Cremer, Vladimír Sychrovský, 2000 .

Chemical shifts in nucleic acids studied by density functional theory calculations and comparison with experiment.

Judith M. Fonville, C. W. Hilbers, S. Wijmenga, 2012, Chemistry.

Restricted Conformational Flexibility of Furanose Derivatives: Ab Initio Interpretation of Their Nuclear Spin−Spin Coupling Constants

P. Bouř, R. Hrabal, Jakub Kaminský, 2004 .

Structure Determination of an Ag(I) -Mediated Cytosine-Cytosine Base Pair within DNA Duplex in Solution with (1) H/(15) N/(109) Ag NMR Spectroscopy.

J. Kondo, Kyoko Furuita, C. Kojima, 2016, Chemistry.

Interactions of hydrated divalent metal cations with nucleic acid bases. How to relate the gas phase data to solution situation and binding selectivity in nucleic acids

J. Šponer, J. Šponer, P. Hobza, 2004 .

Impact of nucleic acid self-alignment in a strong magnetic field on the interpretation of indirect spin–spin interactions

R. Boelens, V. Sklenar, R. Fiala, 2015, Journal of biomolecular NMR.

Revisiting the planarity of nucleic acid bases: Pyramidilization at glycosidic nitrogen in purine bases is modulated by orientation of glycosidic torsion

N. Špačková, K. Robeyns, J. Šponer, 2009, Nucleic acids research.

The mechanism of the glycosylase reaction with hOGG1 base-excision repair enzyme: concerted effect of Lys249 and Asp268 during excision of 8-oxoguanine

T. Kohno, Yoshikazu Hattori, C. Kojima, 2017, Nucleic acids research.

Structural interpretation of the 31P NMR chemical shifts in thiophosphate and phosphate: key effects due to spin-orbit and explicit solvent.

M. Buděšínský, I. Rosenberg, V. Sychrovský, 2019, Physical chemistry chemical physics : PCCP.

The benchmark of 31P NMR parameters in phosphate: a case study on structurally constrained and flexible phosphate.

M. Buděšínský, V. Sychrovský, J. Šebera, 2017, Physical chemistry chemical physics : PCCP.

Raman spectroscopy and DFT calculations of PEDOT:PSS in a dipolar field.

S. Nespurek, R. Polanský, M. Trchová, 2021, Physical chemistry chemical physics : PCCP.

Guanine bases in DNA G-quadruplex adopt nonplanar geometries owing to solvation and base pairing.

V. Sychrovský, L. Trantírek, Zuzana Sochorová Vokáčová, 2012, The journal of physical chemistry. A.

Detection of mercury-TpT dinucleotide binding by Raman spectra: a computational study.

P. Bouř, M. Straka, L. Benda, 2012, The journal of physical chemistry. A.

FTIR Measurement of the Hydrogenated Si(100) Surface: The Structure-Vibrational Interpretation by Means of Periodic DFT Calculation

J. Zemen, J. Holovský, V. Jirásek, 2021 .

The structure of metallo-DNA with consecutive thymine–HgII–thymine base pairs explains positive entropy for the metallo base pair formation

J. Kondo, C. Kojima, A. Ono, 2013, Nucleic acids research.

Interstrand Charge Transport within Metallo-DNA: the Effect Due to Hg(II)- and Ag(I)-Mediated Base Pairs

D. Řeha, V. Sychrovský, J. Šebera, 2020 .

The structural model of Zika virus RNA-dependent RNA polymerase in complex with RNA for rational design of novel nucleotide inhibitors

E. Bouřa, D. Růžek, V. Sychrovský, 2018, Scientific Reports.

Charge transfer through DNA/DNA duplexes and DNA/RNA hybrids: complex theoretical and experimental studies.

B. Schneider, M. Weiter, M. Vala, 2013, Biophysical chemistry.

Calculation of structural behavior of indirect NMR spin-spin couplings in the backbone of nucleic acids.

Vladimír Sychrovský, B. Schneider, N. Špačková, 2006, The journal of physical chemistry. B.

Indirect NMR spin-spin coupling constants 3J(P,C) and 2J(P,H) across the P-O...H-C link can be used for structure determination of nucleic acids.

B. Schneider, J. Šponer, V. Sychrovský, 2006, Journal of the American Chemical Society.

A complete set of NMR chemical shifts and spin-spin coupling constants for L-Alanyl-L-alanine zwitterion and analysis of its conformational behavior.

P. Bouř, Josef Kapitán, M. Buděšínský, 2005, Journal of the American Chemical Society.

The activation of N-glycosidic bond cleavage performed by base-excision repair enzyme hOGG1; theoretical study of the role of Lys 249 residue in activation of G, OxoG and FapyG

Yoshiyuki Tanaka, V. Sychrovský, L. Trantírek, 2014 .

Influence of the O-phosphorylation of serine, threonine and tyrosine in proteins on the amidic 15N chemical shielding anisotropy tensors

J. Koča, R. Boelens, V. Sklenar, 2013, Journal of biomolecular NMR.

HERMES - A Software Tool for the Prediction and Analysis of Magnetic-Field-Induced Residual Dipolar Couplings in Nucleic Acids.

R. Boelens, R. Fiala, J. Zelinka, 2020, ChemPlusChem.

QM and QM/MM umbrella sampling MD study of the formation of Hg(II)–thymine bond: Model for evaluation of the reaction energy profiles in solutions with constant pH

Yoshiyuki Tanaka, Jaroslav V Burda, Filip Šebesta, 2020, J. Comput. Chem..

Leading RNA tertiary interactions: structures, energies, and water insertion of A-minor and P-interactions. A quantum chemical view.

K. Réblová, J. Šponer, J. Šponer, 2007, The journal of physical chemistry. B.

Sugar edge/sugar edge base pairs in RNA: stabilities and structures from quantum chemical calculations.

J. Šponer, J. Šponer, J. Leszczynski, 2005, The journal of physical chemistry. B.

The effect of water on NMR spin–spin couplings in DNA: Improvement of calculated values by application of two solvent models

B. Schneider, V. Sklenar, L. Žídek, 2003 .

Direct detection of the mercury-nitrogen bond in the thymine-Hg(II)-thymine base-pair with (199)Hg NMR spectroscopy.

Chojiro Kojima, Vladimír Sychrovský, Kyoko Furuita, 2015, Chemical communications.

Theoretical and experimental study of charge transfer through DNA: impact of mercury mediated T-Hg-T base pair.

Yoshiyuki Tanaka, M. Weiter, M. Vala, 2014, The journal of physical chemistry. B.

The effect of chemical modification of DNA base on binding of HgII and AgI in metal-mediated base pairs

Yoshiyuki Tanaka, V. Sychrovský, J. Šebera, 2016 .

Formation of a thymine-Hg(II)-thymine metal-mediated DNA base pair: proposal and theoretical calculation of the reaction pathway.

M. Straka, C. Kojima, Yoshiyuki Tanaka, 2013, Chemistry.

On the role of mercury in the non-covalent stabilisation of consecutive U-Hg(II)-U metal-mediated nucleic acid base pairs: metallophilic attraction enters the world of nucleic acids.

M. Straka, L. Benda, Yoshiyuki Tanaka, 2011, Physical chemistry chemical physics : PCCP.

Physicochemical Characterization of the Catalytic Unit of Hammerhead Ribozyme and Its Relationship with the Catalytic Activity

Yoshikazu Hattori, C. Kojima, T. Kodama, 2022, Biophysica.