Sanjay Joshua Swamidass

发表

BEESEM: estimation of binding energy models using HT‐SELEX data

Shuxiang Ruan, Sanjay Joshua Swamidass, Gary D. Stormo, 2017, Bioinform..

ChemDB update - full-text search and virtual chemical space

Pierre Baldi, Sanjay Joshua Swamidass, Dennis Wang, 2007, Bioinform..

XenoSite server: a web-available site of metabolism prediction tool

Sanjay Joshua Swamidass, S. Joshua Swamidass, Matthew K. Matlock, 2015, Bioinform..

Deep learning long-range information in undirected graphs with wave networks

Sanjay Joshua Swamidass, S. Joshua Swamidass, Kevin Jiang, 2018, 2019 International Joint Conference on Neural Networks (IJCNN).

Bounds and Algorithms for Fast Exact Searches of Chemical Fingerprints in Linear and Sublinear Time

Pierre Baldi, Sanjay Joshua Swamidass, S. Joshua Swamidass, 2007, J. Chem. Inf. Model..

Utility-Aware Screening with Clique-Oriented Prioritization

Sanjay Joshua Swamidass, Paul A. Clemons, Joshua A. Bittker, 2012, J. Chem. Inf. Model..

Influence Relevance Voting: An Accurate And Interpretable Virtual High Throughput Screening Method

Pierre Baldi, Sanjay Joshua Swamidass, Chloé-Agathe Azencott, 2009, J. Chem. Inf. Model..

Bridging the Gap Between Neural Network and Kernel Methods: Applications to Drug Discovery

Pierre Baldi, Sanjay Joshua Swamidass, S. Joshua Swamidass, 2011, WIRN.

XenoSite: Accurately Predicting CYP-Mediated Sites of Metabolism with Neural Networks

Sanjay Joshua Swamidass, S. Joshua Swamidass, Matthew K. Matlock, 2013, J. Chem. Inf. Model..

Extending P450 site-of-metabolism models with region-resolution data

Sanjay Joshua Swamidass, Tyler B. Hughes, Jed Zaretzki, 2015, Bioinform..

Standard operating procedure for somatic variant refinement of tumor sequencing data

Malachi Griffith, Obi L. Griffith, Sanjay Joshua Swamidass, 2018, bioRxiv.

Kernels for small molecules and the prediction of mutagenicity, toxicity and anti-cancer activity

Pierre Baldi, Sanjay Joshua Swamidass, Liva Ralaivola, 2005, ISMB.

ChemDB: a public database of small molecules and related chemoinformatics resources

Pierre Baldi, Sanjay Joshua Swamidass, Jonathan H. Chen, 2005, Bioinform..

One- to Four-Dimensional Kernels for Virtual Screening and the Prediction of Physical, Chemical, and Biological Properties

Pierre Baldi, Sanjay Joshua Swamidass, Liva Ralaivola, 2007, J. Chem. Inf. Model..

Statistically identifying tumor suppressors and oncogenes from pan-cancer genome-sequencing data

Obi L. Griffith, Sanjay Joshua Swamidass, S. Joshua Swamidass, 2015, Bioinform..

Mathematical Correction for Fingerprint Similarity Measures to Improve Chemical Retrieval

Pierre Baldi, Sanjay Joshua Swamidass, S. Joshua Swamidass, 2007, J. Chem. Inf. Model..

Accounting for noise when clustering biological data

Sanjay Joshua Swamidass, Roman Sloutsky, Kristen M. Naegle, 2012, Briefings Bioinform..

Improved Prediction of CYP-Mediated Metabolism with Chemical Fingerprints

Sanjay Joshua Swamidass, S. Joshua Swamidass, Jed Zaretzki, 2015, J. Chem. Inf. Model..

A simple model predicts UGT-mediated metabolism

Sanjay Joshua Swamidass, S. Joshua Swamidass, Varun Krishnamurthy, 2016, Bioinform..

Large scale study of multiple-molecule queries

Pierre Baldi, Sanjay Joshua Swamidass, Ramzi Nasr, 2009, J. Cheminformatics.

Scaffold network generator: a tool for mining molecular structures

Sanjay Joshua Swamidass, Matthew K. Matlock, Jed Zaretzki, 2013, Bioinform..

Lossless Compression of Chemical Fingerprints Using Integer Entropy Codes Improves Storage and Retrieval

Pierre Baldi, Sanjay Joshua Swamidass, Daniel S. Hirschberg, 2007, J. Chem. Inf. Model..

Session Introduction

Zhiyong Lu, Pankaj Agarwal, Atul J. Butte, 2013, Pacific Symposium on Biocomputing.

A survey of current trends in computational drug repositioning

Zhiyong Lu, Bin Chen, Atul J. Butte, 2016, Briefings Bioinform..

The diversity and disparity in biomedical informatics (DDBI) workshop

Sanjay Joshua Swamidass, William M. Southerland, Philip R. O. Payne, 2018, PSB.

Managing missing measurements in small-molecule screens

Sanjay Joshua Swamidass, Bradley T. Calhoun, Michael R. Browning, 2013, Journal of Computer-Aided Molecular Design.

A CROC stronger than ROC: measuring, visualizing and optimizing early retrieval

Pierre Baldi, Sanjay Joshua Swamidass, S. Joshua Swamidass, 2010, Bioinform..

Sharing Chemical Relationships Does Not Reveal Structures

Sanjay Joshua Swamidass, Matthew K. Matlock, S. Joshua Joshua Swamidass, 2014, J. Chem. Inf. Model..

Mining small-molecule screens to repurpose drugs

Sanjay Joshua Swamidass, S. Joshua Swamidass, S. Joshua Joshua Swamidass, 2011, Briefings Bioinform..

RS-WebPredictor: a server for predicting CYP-mediated sites of metabolism on drug-like molecules

Sanjay Joshua Swamidass, Charles Bergeron, Patrik Rydberg, 2013, Bioinform..

Bigger data, collaborative tools and the future of predictive drug discovery

Antony J. Williams, Alex M. Clark, Sanjay Joshua Swamidass, 2014, Journal of Computer-Aided Molecular Design.

Discovery of Power-Laws in Chemical Space

Pierre Baldi, Sanjay Joshua Swamidass, S. Joshua Swamidass, 2008, J. Chem. Inf. Model..

Enhancing the rate of scaffold discovery with diversity-oriented prioritization

Sanjay Joshua Swamidass, S. Joshua Swamidass, Paul A. Clemons, 2011, Bioinform..

Accurate and efficient target prediction using a potency-sensitive influence-relevance voter

Pierre Baldi, Sanjay Joshua Swamidass, S. Joshua Swamidass, 2015, Journal of Cheminformatics.

Graph kernels for chemical informatics

Pierre Baldi, Sanjay Joshua Swamidass, Hiroto Saigo, 2005, Neural Networks.

Functional census of mutation sequence spaces: the example of p53 cancer rescue mutants

Pierre Baldi, Ray Luo, Sanjay Joshua Swamidass, 2006, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Statistical Distribution of Chemical Fingerprints

Pierre Baldi, Sanjay Joshua Swamidass, P. Baldi, 2005, WILF.