Pierre R. Bushel

发表

PAGE: phase-shifted analysis of gene expression

Elo Leung, Pierre R. Bushel, P. Bushel, 2006, Bioinform..

Clustering of Gene Expression Data and End-Point Measurements by Simulated Annealing

Pierre R. Bushel, P. Bushel, 2009, J. Bioinform. Comput. Biol..

goSTAG: gene ontology subtrees to tag and annotate genes within a set

Pierre R. Bushel, Brian D. Bennett, 2017, Source Code for Biology and Medicine.

Databases for Toxicogenomics

Pierre R. Bushel, 2005 .

CEBS—Chemical Effects in Biological Systems: a public data repository integrating study design and toxicity data with microarray and proteomics data

Pierre R. Bushel, Hui Gong, Asif Rashid, 2007, Nucleic Acids Res..

Systematic Variation Normalization in Microarray Data to Get Gene Expression Comparison Unbiased

Pierre R. Bushel, Richard S. Paules, Jeff W. Chou, 2005, J. Bioinform. Comput. Biol..

Chemical effects in biological systems (CEBS) object model for toxicology data, SysTox-OM: design and application

Pierre R. Bushel, Jennifer Fostel, Michael D. Waters, 2006, Bioinform..

Extracting gene expression patterns and identifying co-expressed genes from microarray data reveals biologically responsive processes

Tong Zhou, Pierre R. Bushel, Richard S. Paules, 2007, BMC Bioinformatics.

Assessing Gene Significance from cDNA Microarray Expression Data via Mixed Models

Pierre R. Bushel, Russell D. Wolfinger, Greg Gibson, 2001, J. Comput. Biol..

Computational selection of distinct class- and subclass-specific gene expression signatures

Pierre R. Bushel, James Green, Lee Bennett, 2002, J. Biomed. Informatics.

Improved Sparse Multi-Class SVM and Its Application for Gene Selection in Cancer Classification

Pierre R. Bushel, Hao Helen Zhang, Zhao-Bang Zeng, 2013, Cancer informatics.

Dissecting the fission yeast regulatory network reveals phase-specific control elements of its cell cycle

Pierre R. Bushel, Nicholas A. Heard, Liwen Liu, 2009, BMC Systems Biology.

Decision tree-based method for integrating gene expression, demographic, and clinical data to determine disease endotypes

Pierre R. Bushel, David M. Reif, Stephen W. Edwards, 2013, BMC Systems Biology.

MAPS: a microarray project system for gene expression experiment information and data validation

Kate Johnson, Pierre R. Bushel, Lee Bennett, 2001, Bioinform..

Simultaneous clustering of gene expression data with clinical chemistry and pathological evaluations reveals phenotypic prototypes

Pierre R. Bushel, Russell D. Wolfinger, Greg Gibson, 2007, BMC Systems Biology.

A Comparison of the TempO-Seq S1500+ Platform to RNA-Seq and Microarray Using Rat Liver Mode of Action Samples

Pierre R. Bushel, Scott S. Auerbach, Richard S. Paules, 2018, Front. Genet..

Profiles of Global Gene Expression in Ionizing-Radiation–Damaged Human Diploid Fibroblasts Reveal Synchronization behind the G1 Checkpoint in a G0-like State of Quiescence

Pierre R. Bushel, Thomas E. Mullen, Richard S. Paules, 2005, Environmental health perspectives.

STATISTICAL ANALYSIS OF A GENE EXPRESSION MICROARRAY EXPERIMENT WITH REPLICATION

Pierre R. Bushel, Gary A. Churchill, M. Kathleen Kerr, 2002 .

The Rat microRNA body atlas; Evaluation of the microRNA content of rat organs through deep sequencing and characterization of pancreas enriched miRNAs as biomarkers of pancreatic toxicity in the rat and dog

Pierre R. Bushel, Florian Caiment, Patrick Kirby, 2016, BMC Genomics.

The Impact of Classification of Interest on Predictive Toxicogenomics

Pierre R. Bushel, Robnet T. Kerns, 2012, Front. Gene..

Inactivation of DNA Mismatch Repair by Increased Expression of Yeast MLH1

Pierre R. Bushel, Cynthia A. Afshari, Thomas A. Kunkel, 2001, Molecular and Cellular Biology.

Global Transcriptome and Deletome Profiles of Yeast Exposed to Transition Metals

Pierre R. Bushel, P. Bushel, J. Freedman, 2008, PLoS genetics.

Editorial: Integrative Toxicogenomics: Analytical Strategies to Amalgamate Exposure Effects With Genomic Sciences

Pierre R. Bushel, P. Bushel, Weida Tong, 2018, Front. Genet..