Bjoern Peters

发表

The Immune Epitope Database and Analysis Resource: From Vision to Blueprint

Steve Wilson, Bjoern Peters, John Sidney, 2005, PLoS biology.

Discovering transcriptional signatures of disease for diagnosis versus mechanism

Bjoern Peters, Julie G. Burel, Bjoern Peters, 2018, Nature Reviews Immunology.

Navigating diabetes-related immune epitope data: resources and tools provided by the Immune Epitope Database (IEDB)

Bjoern Peters, Alessandro Sette, Matthias von Herrath, 2014, Immunome research.

Epitopes in ChEBI – A Collaboration with the IEDB

Christoph Steinbeck, Bjoern Peters, Gareth Owen, 2010 .

Ontology representation and ANOVA analysis of vaccine protection investigation

Bjoern Peters, Alan Ruttenberg, James Malone, 2010 .

Overcoming the Ontology Enrichment Bottleneck with Quick Term Templates

Bjoern Peters, Alan Ruttenberg, Ryan R. Brinkman, 2009 .

An ontology for immune epitopes: application to the design of a broad scope database of immune reactivities

Bjoern Peters, John Sidney, Huynh-Hoa Bui, 2005, Immunome research.

A Modified Injector and Sample Acquisition Protocol Can Improve Data Quality and Reduce Inter-Instrument Variability of the Helios Mass Cytometer

Bjoern Peters, Alessandro Sette, Yuan Tian, 2019, bioRxiv.

A Model for Collaborative Curation, The IEDB and ChEBI Curation of Non-peptidic Epitopes

Christoph Steinbeck, Bjoern Peters, Randi Vita, 2011 .

Benchmarking predictions of MHC class I restricted T cell epitopes in a comprehensively studied model system

Bjoern Peters, Morten Nielsen, Alessandro Sette, 2020, PLoS Comput. Biol..

DAFi: A Directed Recursive Filtering and Clustering Approach to Data-Driven Identification of Cell Populations from Polychromatic Flow Cytometry Data

Yu Qian, Bjoern Peters, Alessandro Sette, 2017, bioRxiv.

VO: Vaccine Ontology

Bjoern Peters, Barry Smith, Alan Ruttenberg, 2009 .

Development of a novel clustering tool for linear peptide sequences

Bjoern Peters, John Sidney, Alessandro Sette, 2018, Immunology.

Benchmark datasets of immune receptor-epitope structural complexes

Bjoern Peters, Martin Closter Jespersen, Swapnil Mahajan, 2019, BMC Bioinform..

The Ontology for Biomedical Investigations

Jessica A. Turner, Chris F. Taylor, Mathias Brochhausen, 2016, PloS one.

TCRpMHCmodels: Structural modelling of TCR-pMHC class I complexes

Bjoern Peters, Martin Closter Jespersen, Paolo Marcatili, 2019, Scientific Reports.

A Modified Injector and Sample Acquisition Protocol Can Improve Data Quality and Reduce Inter-Instrument Variability of the Helios Mass Cytometer

Bjoern Peters, Alessandro Sette, Adeeb Rahman, 2019 .

Minimal Information About an Immuno‐Peptidomics Experiment (MIAIPE)

Juan Antonio Vizcaíno, Bjoern Peters, Alessandro Sette, 2018, Proteomics.

A behind‐the‐scenes tour of the IEDB curation process: an optimized process empirically integrating automation and human curation efforts

Bjoern Peters, Alessandro Sette, Brian Reardon, 2020, Immunology.

A structured model for immune exposures

Bjoern Peters, Alessandro Sette, Kei-Hoi Cheung, 2020, Database J. Biol. Databases Curation.

DAFi: A directed recursive data filtering and clustering approach for improving and interpreting data clustering identification of cell populations from polychromatic flow cytometry data

Bjoern Peters, Alessandro Sette, Yu Qian, 2018, Cytometry. Part A : the journal of the International Society for Analytical Cytology.

Towards a consensus on datasets and evaluation metrics for developing B‐cell epitope prediction tools

Avner Schlessinger, Jean-Luc Pellequer, Yanay Ofran, 2007, Journal of molecular recognition : JMR.

Ontology Development for the Immune Epitope Database

Bjoern Peters, Alessandro Sette, Randi Vita, 2009, Bioinformatics for Immunomics.

IMMUNOCAT—A Data Management System for Epitope Mapping Studies

Bjoern Peters, John Sidney, Alessandro Sette, 2010, Journal of biomedicine & biotechnology.

BepiPred-2.0: improving sequence-based B-cell epitope prediction using conformational epitopes

Bjoern Peters, Martin Closter Jespersen, Morten Nielsen, 2017, Nucleic Acids Res..

MOGSA: Integrative Single Sample Gene-set Analysis of Multiple Omics Data

Aedín C. Culhane, Bjoern Peters, Bernhard Kuster, 2016, Molecular & Cellular Proteomics.

OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies

Bjoern Peters, Alan Ruttenberg, David Osumi-Sutherland, 2021, Database J. Biol. Databases Curation.

Characterization of the peptide-binding specificity of the chimpanzee class I alleles A*0301 and A*0401 using a combinatorial peptide library

Clemencia Pinilla, Bjoern Peters, John Sidney, 2007, Immunogenetics.

HLA-A*0201, HLA-A*1101, and HLA-B*0702 Transgenic Mice Recognize Numerous Poxvirus Determinants from a Wide Variety of Viral Gene Products1

Bjoern Peters, John Sidney, Huynh-Hoa Bui, 2005, The Journal of Immunology.

Using a combined computational-experimental approach to predict antibody-specific B cell epitopes.

Yanay Ofran, Bjoern Peters, Yan Xiang, 2014, Structure.

The Effect of a Tropical Climate on Available Nutrient Resources to Springs in Ophiolite-Hosted, Deep Biosphere Ecosystems in the Philippines

Morten Nielsen, Bjoern Peters, John Sidney, 2017, Front. Microbiol..

Footprints of antigen processing boost MHC class II natural ligand predictions

Morten Nielsen, Bjoern Peters, Alessandro Sette, 2018, Genome Medicine.

Functional classification of class II human leukocyte antigen (HLA) molecules reveals seven different supertypes and a surprising degree of repertoire sharing across supertypes

Bjoern Peters, John Sidney, Alessandro Sette, 2011, Immunogenetics.

Antibody specific epitope prediction-emergence of a new paradigm.

Yanay Ofran, Bjoern Peters, Inbal Sela-Culang, 2015, Current opinion in virology.

Classification of the Universe of Immune Epitope Literature: Representation and Knowledge Gaps

Bjoern Peters, Alessandro Sette, Kerrie Vaughan, 2009, PloS one.

T Cell Epitope Predictions.

Morten Nielsen, Bjoern Peters, Alessandro Sette, 2020, Annual review of immunology.

The CD8+ T-Cell Response to Lymphocytic Choriomeningitis Virus Involves the L Antigen: Uncovering New Tricks for an Old Virus

Bjoern Peters, John Sidney, Alessandro Sette, 2007, Journal of Virology.

An analysis of the epitope knowledge related to Mycobacteria

Bjoern Peters, Huynh-Hoa Bui, Alessandro Sette, 2007, Immunome research.

Molecular Determinants of T Cell Epitope Recognition to the Common Timothy Grass Allergen

Bjoern Peters, John Sidney, Alessandro Sette, 2010, The Journal of Immunology.

Applications for T-cell epitope queries and tools in the Immune Epitope Database and Analysis Resource.

Bjoern Peters, Alessandro Sette, Yohan Kim, 2011, Journal of immunological methods.

The Immune Epitope Database and Analysis Resource Program 2003–2018: reflections and outlook

Morten Nielsen, Bjoern Peters, Alessandro Sette, 2019, Immunogenetics.

HLA class I-restricted responses to vaccinia recognize a broad array of proteins mainly involved in virulence and viral gene regulation.

Bjoern Peters, John Sidney, Huynh-Hoa Bui, 2005, Proceedings of the National Academy of Sciences of the United States of America.

Epitope Specific Antibodies and T Cell Receptors in the Immune Epitope Database

Morten Nielsen, Bjoern Peters, Alessandro Sette, 2018, Front. Immunol..

Memory T Cells in Latent Mycobacterium tuberculosis Infection Are Directed against Three Antigenic Islands and Largely Contained in a CXCR3+CCR6+ Th1 Subset

Bjoern Peters, John Sidney, Alessandro Sette, 2013, PLoS pathogens.

Improved prediction of MHC II antigen presentation through integration and motif deconvolution of mass spectrometry MHC eluted ligand data.

Morten Nielsen, Bjoern Peters, Birkir Reynisson, 2020, Journal of proteome research.

Epigenomic analysis of primary human T cells reveals enhancers associated with TH2 memory cell differentiation and asthma susceptibility

Bjoern Peters, Matthias Lienhard, Lukas Chavez, 2014, Nature Immunology.

Five HLA-DP Molecules Frequently Expressed in the Worldwide Human Population Share a Common HLA Supertypic Binding Specificity

Bjoern Peters, John Sidney, Alessandro Sette, 2010, The Journal of Immunology.

CD 8 T-cell reactivity to islet antigens is unique to type 1 while CD 4 T-cell reactivity exists in both type 1 and type 2 diabetes

Bjoern Peters, Eithon Cadag, Bjoern Peters, 2014 .

CD8 T-cell reactivity to islet antigens is unique to type 1 while CD4 T-cell reactivity exists in both type 1 and type 2 diabetes.

Bjoern Peters, Matthias von Herrath, Eithon Cadag, 2014, Journal of autoimmunity.

Predicting T cell recognition of MHC class I restricted neoepitopes

Bjoern Peters, John Sidney, Alessandro Sette, 2018, Oncoimmunology.

A Meta-Analysis of the Existing Knowledge of Immunoreactivity against Hepatitis C Virus (HCV)

Bjoern Peters, Alessandro Sette, Jason Greenbaum, 2012, PloS one.

Limitations of Ab Initio Predictions of Peptide Binding to MHC Class II Molecules

Ying Xu, Philip E. Bourne, Morten Nielsen, 2010, PloS one.

NetMHCpan-4.1 and NetMHCIIpan-4.0: improved predictions of MHC antigen presentation by concurrent motif deconvolution and integration of MS MHC eluted ligand data

Morten Nielsen, Bjoern Peters, Sinu Paul, 2020, Nucleic Acids Res..

Design and utilization of epitope-based databases and predictive tools

Bjoern Peters, Ward Fleri, Alessandro Sette, 2010, Immunogenetics.

A Quantitative Analysis of Complexity of Human Pathogen-Specific CD4 T Cell Responses in Healthy M. tuberculosis Infected South Africans

Bjoern Peters, Alessandro Sette, Sinu Paul, 2016, PLoS pathogens.

Immune Epitope Database and Analysis Resource

Bjoern Peters, Ward Fleri, Alessandro Sette, 2016 .

Allergy-associated T cell epitope repertoires are surprisingly diverse and include non-IgE reactive antigens

Bjoern Peters, John Sidney, Alessandro Sette, 2014, The World Allergy Organization journal.

The immune epitope database: a historical retrospective of the first decade

Bjoern Peters, Ward Fleri, Alessandro Sette, 2012, Immunology.

The Immune Epitope Database and Analysis Resource in Epitope Discovery and Synthetic Vaccine Design

Bjoern Peters, Ward Fleri, Alessandro Sette, 2017, Front. Immunol..

Analysis of epitope information related to Bacillus anthracis and Clostridium botulinum

Bjoern Peters, John Sidney, Alessandro Sette, 2008, Expert review of vaccines.

Insights into HLA-Restricted T Cell Responses in a Novel Mouse Model of Dengue Virus Infection Point toward New Implications for Vaccine Design

Bjoern Peters, John Sidney, Alessandro Sette, 2011, The Journal of Immunology.

Ab and T cell epitopes of influenza A virus, knowledge and opportunities

Bjoern Peters, Huynh-Hoa Bui, Alessandro Sette, 2007, Proceedings of the National Academy of Sciences.

The role of stents in the treatment of congenital heart disease: Current status and future perspectives

Bjoern Peters, Felix Berger, Bjoern Peters, 2009, Annals of pediatric cardiology.

Pre-existing immunity against swine-origin H1N1 influenza viruses in the general human population

Bjoern Peters, Alessandro Sette, Richard H Scheuermann, 2009, Proceedings of the National Academy of Sciences.

Evaluating the Immunogenicity of Protein Drugs by Applying In Vitro MHC Binding Data and the Immune Epitope Database and Analysis Resource

Bjoern Peters, John Sidney, Ward Fleri, 2013, Clinical & developmental immunology.

A Quantitative Analysis of the Variables Affecting the Repertoire of T Cell Specificities Recognized after Vaccinia Virus Infection1

Bjoern Peters, John Sidney, Huynh-Hoa Bui, 2007, The Journal of Immunology.

IEDB-AR: immune epitope database—analysis resource in 2019

Morten Nielsen, Bjoern Peters, Alessandro Sette, 2019, Nucleic Acids Res..

Immune epitope mapping in the post-genomic era: lessons for vaccine development.

Bjoern Peters, Alessandro Sette, Bjoern Peters, 2007, Current opinion in immunology.

Naive Precursor Frequencies and MHC Binding Rather Than the Degree of Epitope Diversity Shape CD8+ T Cell Immunodominance1

Bjoern Peters, John Sidney, Alessandro Sette, 2008, The Journal of Immunology.

Toxoplasma gondii peptide ligands open the gate of the HLA class I binding groove

Morten Nielsen, Bjoern Peters, Alessandro Sette, 2016, eLife.

17q21 asthma-risk variants switch CTCF binding and regulate IL-2 production by T cells

Bjoern Peters, Alessandro Sette, Ferhat Ay, 2016, Nature Communications.

HLA Class I Alleles Are Associated with Peptide-Binding Repertoires of Different Size, Affinity, and Immunogenicity

Bjoern Peters, John Sidney, Alessandro Sette, 2013, The Journal of Immunology.

Quantitating T Cell Cross-Reactivity for Unrelated Peptide Antigens1

Bjoern Peters, John Sidney, Alessandro Sette, 2009, The Journal of Immunology.

Improved prediction of MHC II antigen presentation through integration and motif deconvolution of mass spectrometry MHC eluted ligand data

Morten Nielsen, Bjoern Peters, William H. Hildebrand, 2019, bioRxiv.