J. Kielbassa

发表

Comprehensive characterization of claudin-low breast tumors reflects the impact of the cell-of-origin on cancer evolution

P. Martinez, A. Puisieux, A. Morel, 2020, Nature Communications.

A 13-gene expression-based radioresistance score highlights the heterogeneity in the response to radiation therapy across HPV-negative HNSCC molecular subtypes

A. Viari, A. Puisieux, P. Saintigny, 2017, BMC Medicine.

Immunological and classical subtypes of oral premalignant lesions

S. Lippman, L. Mao, A. Viari, 2018, Oncoimmunology.

Repurposing rotavirus vaccines for intratumoral immunotherapy can overcome resistance to immune checkpoint blockade

G. Hutter, A. Viari, C. Caux, 2019, Science Translational Medicine.

Exploration of the core metabolism of symbiotic bacteria

M. Sagot, C. Gautier, H. Charles, 2012, BMC Genomics.

Ribosomal RNA 2′O-methylation as a novel layer of inter-tumour heterogeneity in breast cancer

A. Thompson, F. André, A. Viari, 2020, NAR cancer.

Comparative roadmaps of reprogramming and oncogenic transformation identify Bcl11b and Atoh8 as broad regulators of cellular plasticity

H. Gronemeyer, M. Brevet, M. Mendoza-Parra, 2022, Nature Cell Biology.

Ribosomal RNA 2 (cid:2) O-methylation as a novel layer of inter-tumour heterogeneity in breast cancer

F. André, A. Viari, J. Bourdon, 2020 .

Mutational Profile of Aggressive, Localised Prostate Cancer from African Caribbean Men Versus European Ancestry Men.

S. Boyault, M. Gut, I. Gut, 2019, European urology.

Ribosomal RNA 2′ O-methylation as a novel layer of inter-tumour heterogeneity in breast cancer

F. André, A. Viari, J. Bourdon, 2021, NAR cancer.

A whole-genome sequence and transcriptome perspective on HER2-positive breast cancers

Alain Viari, Thomas Bachelot, Michael R. Stratton, 2016, Nature Communications.

Theme: Computational Biology and Bioinformatics Computational Sciences for Biology, Medicine and the Environment

Marie-France Sagot, Rayan Chikhi, Pierre Peterlongo, 2012 .

An individual-based model to describe a bullhead population dynamics including temperature variations

Fabien Subtil, Sandrine Charles, Didier Pont, 2008 .

The importance of incorporating age and sex when backcalculating length in bullhead Cottus gobio.

M. Delignette-Muller, J. Kielbassa, S. Charles, 2011, Journal of fish biology.

Application of a temperature-dependent von Bertalanffy growth model to bullhead (Cottus gobio)

D. Pont, S. Charles, M. Delignette-Muller, 2010 .

Exploration of the core metabolism of symbiotic bacteria

M. Sagot, C. Gautier, H. Charles, 2012, BMC Genomics.

IFN-III is selectively produced by cDC1 and predicts good clinical outcome in breast cancer

I. Treilleux, C. Caux, O. Trédan, 2020, Science Immunology.

SNP calling from RNA-seq data without a reference genome: identification, quantification, differential analysis and impact on the protein sequence

Franck Picard, Marie-France Sagot, Camille Marchet, 2016, Nucleic acids research.

Comprehensive characterization of claudin-low breast tumors reflects the impact of the cell-of-origin on cancer evolution

P. Martinez, A. Puisieux, A. Morel, 2020, Nature Communications.

De novo identification, differential analysis and functional annotation of SNPs from RNA-seq data in non-model species

C. Vieira, M. Sagot, F. Picard, 2015, bioRxiv.

KISSPLICE: de-novo calling alternative splicing events from RNA-seq data

R. Chikhi, G. Sacomoto, M. Sagot, 2012, BMC Bioinformatics.

Mutational Profile of Aggressive, Localised Prostate Cancer from African Caribbean Men Versus European Ancestry Men.

S. Boyault, M. Gut, I. Gut, 2019, European urology.

Proceedings of the SeqBio 2015 workshop: String algorithms for bioinformatics

T. Lecroq, G. Fertin, R. Chikhi, 2021 .

IDHwt and IDHmut adult-type diffuse gliomas display distinct alterations in ribosome biogenesis and 2'O-methylation of ribosomal RNA.

Michelle S. Scott, Danny Bergeron, F. Ducray, 2023, Neuro-oncology.