Chongle Pan

发表

High performance statistical computing with parallel R: Applications to biology and climate modelling

Arie Shoshani, Nagiza F. Samatova, Xiaosong Ma, 2006 .

Sipros Ensemble improves database searching and filtering for complex metaproteomics

Zhou Li, David L. Tabb, Qiuming Yao, 2017, Bioinform..

A graph-theoretic approach for the separation of b and y ions in tandem mass spectra

Bo Yan, Ying Xu, Victor Olman, 2005, Bioinform..

SORA: Scalable Overlap-graph Reduction Algorithms for Genome Assembly using Apache Spark in the Cloud

Seung-Hwan Lim, Chongle Pan, Myoungkyu Song, 2018, 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Sipros/ProRata: a versatile informatics system for quantitative community proteomics

Zhou Li, Yingfeng Wang, Chongle Pan, 2013, Bioinform..

Sigma: Strain-level inference of genomes from metagenomic analysis for biosurveillance

Chongle Pan, Tae-Hyuk Ahn, Juanjuan Chai, 2014, Bioinform..

Omega: an Overlap-graph de novo Assembler for Metagenomics

Bahlul Haider, Alex Copeland, Chongle Pan, 2014, Bioinform..

Exhaustive database searching for amino acid mutations in proteomes

Doug Hyatt, Chongle Pan, C. Pan, 2012, Bioinform..

In Silico Recognition of Protein-Protein Interaction: Theory and Applications

Nagiza F. Samatova, Byung-Hoon Park, Al Geist, 2006 .

A high-throughput de novo sequencing approach for shotgun proteomics using high-resolution tandem mass spectrometry

Nagiza F. Samatova, Byung-Hoon Park, Jillian F. Banfield, 2010, BMC Bioinformatics.

Using Apache Spark on genome assembly for scalable overlap-graph reduction

Tae-Hyuk Ahn, Chongle Pan, Myoungkyu Song, 2019, Human Genomics.

Separation of ion types in tandem mass spectrometry data interpretation - a graph-theoretic approach

Bo Yan, Ying Xu, Victor Olman, 2004, Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004..

Scientific Data Analysis

Nagiza F. Samatova, Krishna Rajan, George Karypis, 2009, Scientific Data Management.

Data driven computing for Biological Systems

Nagiza F. Samatova, Tjerk P. Straatsma, Edward C. Uberbacher, 2007 .

Diverse and divergent protein post-translational modifications in two growth stages of a natural microbial community

Qiuming Yao, Jillian F. Banfield, Chongle Pan, 2014, Nature Communications.

Elucidation of Zymomonas mobilis physiology and stress responses by quantitative proteomics and transcriptomics

Brian H. Davison, Chongle Pan, Gregory B. Hurst, 2014, Front. Microbiol..

Separation of ion types in tandem mass spectrometry data interpretation - a graph-theoretic approach

Ying Xu, Victor Olman, Chongle Pan, 2004 .

ProRata: A quantitative proteomics program for accurate protein abundance ratio estimation with confidence interval evaluation.

David L Tabb, Guruprasad Kora, Chongle Pan, 2006, Analytical chemistry.

Cultivation and quantitative proteomic analyses of acidophilic microbial communities

Chongle Pan, Jillian F Banfield, Nathan C VerBerkmoes, 2010, The ISME Journal.

Microbial metaproteomics for characterizing the range of metabolic functions and activities of human gut microbiota

Chongle Pan, Paul E Abraham, Weili Xiong, 2015, Proteomics.

Characterization of Anaerobic Catabolism of p-Coumarate in Rhodopseudomonas palustris by Integrating Transcriptomics and Quantitative Proteomics*S

Nagiza F. Samatova, Chongle Pan, Robert L. Hettich, 2008, Molecular & Cellular Proteomics.

Title A high-throughput de novo sequencing approach for shotgun proteomics using high-resolution tandem mass spectrometry Permalink

Chongle Pan, Jillian F Banfield, Nathan C VerBerkmoes, 2010 .

Metaproteomics: harnessing the power of high performance mass spectrometry to identify the suite of proteins that control metabolic activities in microbial communities.

Chongle Pan, Richard J. Giannone, R. Hettich, 2013, Analytical chemistry.

Robust estimation of peptide abundance ratios and rigorous scoring of their variability and bias in quantitative shotgun proteomics.

David L Tabb, Guruprasad Kora, Chongle Pan, 2006, Analytical chemistry.

Quantitative Tracking of Isotope Flows in Proteomes of Microbial Communities

Jillian F. Banfield, Doug Hyatt, Chongle Pan, 2011, Molecular & Cellular Proteomics.

Mass spectrometric approaches for characterizing bacterial proteomes

Chongle Pan, Nathan C VerBerkmoes, R. Hettich, 2004, Expert review of proteomics.

Effects of Diet on Resource Utilization by a Model Human Gut Microbiota Containing Bacteroides cellulosilyticus WH2, a Symbiont with an Extensive Glycobiome

Bernard Henrissat, Brian K. Erickson, Chongle Pan, 2013, PLoS biology.

Strategies for Metagenomic-Guided Whole-Community Proteomics of Complex Microbial Environments

Brandi L. Cantarel, Brian K. Erickson, Manesh Shah, 2011, PloS one.

Integrated proteomics and metabolomics suggests symbiotic metabolism and multimodal regulation in a fungal‐endobacterial system

Qiuming Yao, Chongle Pan, Gregory B. Hurst, 2017, Environmental microbiology.

Proteomic Stable Isotope Probing Reveals Taxonomically Distinct Patterns in Amino Acid Assimilation by Coastal Marine Bacterioplankton

Chongle Pan, Ryan S. Mueller, Robert L. Hettich, 2016, mSystems.

Impact of Pretreated Switchgrass and Biomass Carbohydrates on Clostridium thermocellum ATCC 27405 Cellulosome Composition: A Quantitative Proteomic Analysis

Nagiza F. Samatova, Jonathan R. Mielenz, Chongle Pan, 2009, PloS one.

Proteomic Stable Isotope Probing Reveals Biosynthesis Dynamics of Slow Growing Methane Based Microbial Communities

Chongle Pan, Connor T. Skennerton, Robert L. Hettich, 2016, Front. Microbiol..

Improved genome annotation for Zymomonas mobilis

Gwo-Liang Chen, Chongle Pan, Dale A Pelletier, 2009, Nature Biotechnology.

Efficient and specific trypsin digestion of microgram to nanogram quantities of proteins in organic-aqueous solvent systems.

David L Tabb, Chongle Pan, W Judson Hervey, 2006, Analytical chemistry.

Integrated Metagenomics/Metaproteomics Reveals Human Host-Microbiota Signatures of Crohn's Disease

Brandi L. Cantarel, Bernard Henrissat, Jeroen Raes, 2012, PloS one.

Proteome changes in the initial bacterial colonist during ecological succession in an acid mine drainage biofilm community.

Brian C. Thomas, Chongle Pan, Ryan S. Mueller, 2011, Environmental microbiology.