D. Staněk

发表

Nuclear organization studied with the help of a hypotonic shift: its use permits hydrophilic molecules to enter into living cells

A. Pliss, I. Raška, A. Pliss, 1999, Chromosoma.

Dynamics of Mitochondrial RNA-Binding Protein Complex in Trypanosoma brucei and Its Petite Mutant under Optimized Immobilization Conditions

H. Hashimi, J. Lukeš, E. Simkova, 2014, Eukaryotic Cell.

Splicing of long non-coding RNAs primarily depends on polypyrimidine tract and 5′ splice-site sequences due to weak interactions with SR proteins

Nicole I Bieberstein, Michaela Müller-McNicoll, D. Staněk, 2018, Nucleic acids research.

TALE-directed local modulation of H3K9 methylation shapes exon recognition

Nicole I Bieberstein, E. Kozakova, M. Huranova, 2016, Scientific Reports.

The Sm-core mediates the retention of partially-assembled spliceosomal snRNPs in Cajal bodies until their full maturation

Cyrille Girard, C. Will, R. Lührmann, 2018, Nucleic acids research.

Nuclear bodies: news insights into structure and function.

A. Fox, D. Staněk, 2017, Current opinion in cell biology.

Retinitis Pigmentosa Mutations of SNRNP200 Enhance Cryptic Splice‐Site Recognition

D. Staněk, Daniel Matějů, Z. Cvačková, 2014, Human mutation.

Pontin is localized in nucleolar fibrillar centers

I. Raška, K. Koberna, O. Huber, 2008, Chromosoma.

The splicing factor U1-70K interacts with the SMN complex and is required for nuclear gem integrity

D. Staněk, E. Stejskalová, 2014, Journal of Cell Science.

DrpB (YedR) Is a Nonessential Cell Division Protein in Escherichia coli

U. Müh, S. Arends, D. Staněk, 2020, Journal of Bacteriology.

In situ fluorescence visualization of bromouridine incorporated into newly transcribed nucleolar RNA.

I. Raška, K. Koberna, J. Malínský, 2000, Acta histochemica.

Non-isotopic detection of nucleolar transcription in pre-implantation mouse embryos.

I. Raška, A. Pliss, K. Koberna, 1998, Reproduction, nutrition, development.

PUF60-activated exons uncover altered 3′ splice-site selection by germline missense mutations in a single RRM

M. Hiller, J. Královičová, I. Vořechovský, 2018, Nucleic acids research.

BRAT1 links Integrator and defective RNA processing with neurodegeneration

K. Caldecott, H. Hanzlíková, M. Kolář, 2022, Nature Communications.

Heterogenous nuclear RNP C1 and C2 core proteins are targets for an autoantibody found in the serum of a patient with systemic sclerosis and psoriatic arthritis.

I. Raška, J. Vencovský, D. Staněk, 1997, Arthritis and rheumatism.

SART3-Dependent Accumulation of Incomplete Spliceosomal snRNPs in Cajal Bodies.

D. Staněk, Z. Knejzlík, Adriana Roithová, 2015, Cell reports.

In vivo kinetics of Cajal body components

T. Misteli, T. Karpova, M. Dundr, 2004, The Journal of cell biology.

Retinitis pigmentosa associated mutations in mouse Prpf8 cause misexpression of circRNAs and degeneration of cerebellar granule neurons

M. Kolář, R. Sedláček, M. Modrák, 2022, bioRxiv.

Cajal bodies and snRNPs - friends with benefits

D. Staněk, 2016, RNA biology.

Assembly of the U5 snRNP component PRPF8 is controlled by the HSP90/R2TP chaperones

Z. Hořejší, E. Bertrand, F. Vandermoere, 2017, The Journal of cell biology.

The differential interaction of snRNPs with pre-mRNA reveals splicing kinetics in living cells

I. Poser, Y. Shav-Tal, A. Benda, 2010, The Journal of cell biology.

snRNP proteins in health and disease.

D. Staněk, M. Krausová, 2017, Seminars in cell & developmental biology.

Mutations in spliceosomal proteins and retina degeneration

D. Staněk, S. Růz̆ic̆ková, 2016, RNA biology.

Chromatin position in human HepG2 cells: Although being non-random, significantly changed in daughter cells

Helena Fidlerová, Ivan Raška, I. Raška, 2009, Journal of structural biology.

Coilin: The first 25 years

K. Neugebauer, D. Staněk, Martin Machyna, 2015, RNA biology.

The Cajal body: a meeting place for spliceosomal snRNPs in the nuclear maze

K. Neugebauer, D. Staněk, 2006, Chromosoma.

Targeting of U4/U6 small nuclear RNP assembly factor SART3/p110 to Cajal bodies

K. Neugebauer, M. Klingauf, D. Staněk, 2003, The Journal of cell biology.

Long non-coding RNAs and splicing.

D. Staněk, 2021, Essays in biochemistry.

Where splicing joins chromatin

D. Staněk, Jarmila Hnilicová, 2011, Nucleus.

Histone Deacetylase Activity Modulates Alternative Splicing

Jaroslav Icha, J. Icha, Jarmila Hnilicová, 2011, PloS one.

Enhancement of U4/U6 small nuclear ribonucleoprotein particle association in Cajal bodies predicted by mathematical modeling.

K. Neugebauer, M. Klingauf, D. Staněk, 2006, Molecular biology of the cell.

HIV-1 infection reduces NAD capping of host cell snRNA and snoRNA

J. Pačes, J. Kowalska, Hana Cahová, 2022, bioRxiv.

In vivo detection of RNA-binding protein interactions with cognate RNA sequences by fluorescence resonance energy transfer.

A. Benda, M. Hof, M. Caputi, 2009, RNA.

Probing Nucleic Acid Interactions and Pre-mRNA Splicing by Förster Resonance Energy Transfer (FRET) Microscopy

E. Simkova, D. Staněk, 2012, International journal of molecular sciences.

CRE promoter sites modulate alternative splicing via p300-mediated histone acetylation

D. Staněk, Jarmila Hnilicová, Eva Dušková, 2014, RNA biology.

DIS3L2 and LSm proteins are involved in the surveillance of Sm ring-deficient snRNAs

Š. Vaňáčová, D. Staněk, Adriana Roithová, 2020, Nucleic acids research.

Detection of snRNP assembly intermediates in Cajal bodies by fluorescence resonance energy transfer

K. Neugebauer, D. Staněk, 2004, The Journal of cell biology.

SATB1 undergoes isoform-specific phase transitions in T cells

G. Panagopoulos, V. Papadakis, Charalampos G Spilianakis, 2021, bioRxiv.

The C-terminal domain of Brd2 is important for chromatin interaction and regulation of transcription and alternative splicing

Martin Hof, Jana Humpolíčková, Ina Poser, 2013, Molecular biology of the cell.

TSSC4 is a component of U5 snRNP that promotes tri-snRNP formation

E. Bertrand, F. Vandermoere, D. Staněk, 2021, Nature Communications.

Non-isotopic mapping of ribosomal RNA synthesis and processing in the nucleolus

Artem Pliss, Karel Koberna, Jan Malínský, 2001, Chromosoma.

Pre-ribosomal RNA is processed in permeabilised cells at the site of transcription.

I. Raška, T. Kiss, I Raska, 2000, European journal of cell biology.

The supply of exogenous deoxyribonucleotides accelerates the speed of the replication fork in early S-phase.

I. Raška, K. Koberna, J. Malínský, 2001, Journal of cell science.

Spliceosomal small nuclear ribonucleoprotein particles repeatedly cycle through Cajal bodies.

K. Neugebauer, M. Blažíková, M. Huranova, 2008, Molecular biology of the cell.

Patterns of nitric oxide synthase at the messenger RNA and protein levels during early rat brain development

G. Keilhoff, W. Tischmeyer, B. Seidel, 1996, Neuroscience.

A novel SATB1 protein isoform with different biophysical properties

G. Panagopoulos, V. Papadakis, J. Papamatheakis, 2021, bioRxiv.

SATB1 undergoes isoform-specific phase transitions in T cells

G. Panagopoulos, V. Papadakis, Charalampos G Spilianakis, 2021 .

Modeling of snRNP Motion in the Nucleoplasm

P. Heřman, M. Blažíková, J. Malínský, 2008 .

A mutation linked to retinitis pigmentosa in HPRP31 causes protein instability and impairs its interactions with spliceosomal snRNPs.

M. Huranova, D. Staněk, Jarmila Hnilicová, 2009, Human molecular genetics.

Correction: Retinitis pigmentosa-linked mutation in DHX38 modulates its splicing activity

M. Kolář, D. Staněk, J. Kubovčiak, 2022, PloS one.

Nuclear LSm8 affects number of cytoplasmic processing bodies via controlling cellular distribution of Like-Sm proteins

L. Valášek, P. Svoboda, M. Blažíková, 2012, Molecular biology of the cell.

Retinitis pigmentosa–associated mutations in mouse Prpf8 cause misexpression of circRNAs and degeneration of cerebellar granule cells

M. Kolář, R. Sedláček, M. Modrák, 2023, Life Science Alliance.

SART3-Dependent Accumulation of Incomplete Spliceosomal snRNPs in Cajal Bodies.

D. Staněk, Z. Knejzlík, Adriana Roithová, 2015, Cell reports.