Patrick O. Brown

发表

The Stanford Tissue Microarray Database

Nigam H. Shah, Gavin Sherlock, Yasodha Natkunam, 2007, Nucleic Acids Res..

Cancer characterization and feature set extraction by discriminative margin clustering

Kamesh Munagala, Robert Tibshirani, Patrick O. Brown, 2004, BMC Bioinformatics.

The Stanford Microarray Database accommodates additional microarray platforms and data formats

Gavin Sherlock, Catherine A. Ball, Tina Hernandez-Boussard, 2004, Nucleic Acids Res..

Bethesda Statement on Open Access Publishing

Richard J. Roberts, Richard K. Johnson, Peter Suber, 2003 .

The Stanford Microarray Database

David Botstein, Paul T. Spellman, Shuai Weng, 2001, Nucleic Acids Res..

Gene Shaving: a new class of clustering methods for expression arrays

Trevor Hastie, Robert Tibshirani, David Botstein, 2000 .

The Stanford Microarray Database: implementation of new analysis tools and open source release of software

Gavin Sherlock, Catherine A. Ball, Tina Hernandez-Boussard, 2002, Nucleic Acids Res..

The Stanford Microarray Database: data access and quality assessment tools

David Botstein, Gail Binkley, Gavin Sherlock, 2003, Nucleic Acids Res..

Visualizing associations between genome sequences and gene expression data using genome-mean expression profiles

Michael B. Eisen, Derek Y. Chiang, Patrick O. Brown, 2001, ISMB.

SOURCE: a unified genomic resource of functional annotations, ontologies, and gene expression data

David Botstein, Ash A. Alizadeh, Gail Binkley, 2003, Nucleic Acids Res..

Nonparametric methods for identifying differentially expressed genes in microarray data

Russ B. Altman, David Botstein, Olga G. Troyanskaya, 2002, Bioinform..

Processing and modeling genome-wide expression data using singular value decomposition

David Botstein, Patrick O. Brown, Orly Alter, 2001, SPIE BiOS.

Missing value estimation methods for DNA microarrays

Russ B. Altman, Robert Tibshirani, David Botstein, 2001, Bioinform..

Rapid quantitative profiling of complex microbial populations

Michael B. Eisen, Elisabeth M. Bik, Patrick O. Brown, 2006, Nucleic acids research.

Diversity, topographic differentiation, and positional memory in human fibroblasts

David Botstein, Sandrine Dudoit, Howard Y. Chang, 2002, Proceedings of the National Academy of Sciences of the United States of America.

Variation in gene expression patterns in follicular lymphoma and the response to rituximab

David Botstein, Olga G. Troyanskaya, Patrick O. Brown, 2003, Proceedings of the National Academy of Sciences of the United States of America.

Characteristic genome rearrangements in experimental evolution of Saccharomyces cerevisiae

David Botstein, Patrick O. Brown, Maitreya J. Dunham, 2002, Proceedings of the National Academy of Sciences of the United States of America.

Relation of Gene Expression Phenotype to Immunoglobulin Mutation Genotype in B Cell Chronic Lymphocytic Leukemia

David Botstein, Ash A. Alizadeh, Richard Simon, 2001, The Journal of experimental medicine.

Phospholipase A2 group IIA expression in gastric adenocarcinoma is associated with prolonged survival and less frequent metastasis

Rui Li, David Botstein, Olga G. Troyanskaya, 2002, Proceedings of the National Academy of Sciences of the United States of America.

Gene Expression Patterns in Pancreatic Tumors, Cells and Tissues

Patrick O. Brown, Matt van de Rijn, P. Brown, 2007, PloS one.

Cell-Type Specific Features of Circular RNA Expression

Julia Salzman, Patrick O. Brown, P. Brown, 2013, PLoS genetics.

Promoter-specific binding of Rap1 revealed by genome-wide maps of protein–DNA association

David Botstein, Patrick O. Brown, D. Botstein, 2001, Nature Genetics.

Dissecting eukaryotic translation and its control by ribosome density mapping

Daniel Herschlag, Patrick O. Brown, Yoav Arava, 2005, Nucleic acids research.

Genomewide view of gene silencing by small interfering RNAs

Howard Y. Chang, Patrick O. Brown, P. Brown, 2003, Proceedings of the National Academy of Sciences of the United States of America.

Automated Analysis and Classification of Histological Tissue Features by Multi-Dimensional Microscopic Molecular Profiling

Robert B. West, Patrick O. Brown, R. West, 2015, PloS one.

Systematic Identification of mRNAs Recruited to Argonaute 2 by Specific microRNAs and Corresponding Changes in Transcript Abundance

Daniel Herschlag, Patrick O. Brown, James E. Ferrell, 2008, PloS one.

Observing the living genome.

Patrick O. Brown, P. Brown, T. Ferea, 1999 .

Regulation of CSF1 Promoter by the SWI/SNF-like BAF Complex

Martha Kirby, Rui Liu, Patrick O. Brown, 2001, Cell.

NOVEL GENOME-SCALE CORRELATION BETWEEN DNA REPLICATION AND RNA TRANSCRIPTION DURING THE CELL CYCLE IN YEAST IS PREDICTED BY DATA-DRIVEN MODELS

Gene H. Golub, David Botstein, Patrick O. Brown, 2004 .

Genomewide demarcation of RNA polymerase II transcription units revealed by physical fractionation of chromatin

Patrick O. Brown, Michael L. Cleary, P. Brown, 2003, Proceedings of the National Academy of Sciences of the United States of America.

Global and Specific Translational Regulation in the Genomic Response of Saccharomyces cerevisiae to a Rapid Transfer from a Fermentable to a Nonfermentable Carbon Source

Patrick O. Brown, Joseph L. DeRisi, Kenneth M. Kuhn, 2001, Molecular and Cellular Biology.

DNA Methylation Profiles of Ovarian Epithelial Carcinoma Tumors and Cell Lines

Peter W. Laird, Beatrice S. Knudsen, Patrick O. Brown, 2010, PloS one.

Identification of clinically distinct types of diffuse large B-cell lymphoma based on gene expressio

Robert Tibshirani, David Botstein, Li Yang, 2000 .

Effects of Mutations in Residues near the Active Site of Human Immunodeficiency Virus Type 1 Integrase on Specific Enzyme-Substrate Interactions

Patrick O. Brown, Jennifer L. Gerton, P. Brown, 1998, Journal of Virology.

Proteome-Wide Search Reveals Unexpected RNA-Binding Proteins in Saccharomyces cerevisiae

Julia Salzman, Patrick O. Brown, P. Brown, 2010, PloS one.

Erratum: Diversity of gene expression in adenocarcinoma of the lung (Proceedings of the National Academy of Sciences of the United States of America (2001) 98 (13784-13789))

Russ B. Altman, David Botstein, Olga G. Troyanskaya, 2002 .

Imputing Missing Data for Gene Expression Arrays

Trevor Hastie, Robert Tibshirani, David Botstein, 2001 .

Observing the living genome

Patrick O. Brown, P. Brown, 1999, Nature Genetics.

Probing Lymphocyte Biology by Genomic-Scale Gene Expression Analysis

David Botstein, Ash A. Alizadeh, Patrick O. Brown, 1998, Journal of Clinical Immunology.

Widespread mRNA Association with Cytoskeletal Motor Proteins and Identification and Dynamics of Myosin-Associated mRNAs in S. cerevisiae

W. E. Moerner, Julia Salzman, Patrick O. Brown, 2012, PloS one.

Directed Chemical Evolution with an Outsized Genetic Code

Patrick O. Brown, Nicolas P. Tilmans, P. Brown, 2016, PloS one.

The Preclinical Natural History of Serous Ovarian Cancer: Defining the Target for Early Detection

Patrick O. Brown, P. Brown, C. Palmer, 2009, PLoS medicine.

Circular RNAs Are the Predominant Transcript Isoform from Hundreds of Human Genes in Diverse Cell Types

Charles Gawad, Julia Salzman, Patrick O. Brown, 2012, PloS one.

RERG Is a Novel ras-related, Estrogen-regulated and Growth-inhibitory Gene in Breast Cancer*

David Botstein, Charles M. Perou, Patrick O. Brown, 2001, The Journal of Biological Chemistry.