Tong Zhou

发表

Support vector machine for classification of meiotic recombination hotspots and coldspots in Saccharomyces cerevisiae based on codon composition

Xiao Sun, Tong Zhou, Zuhong Lu, 2005, BMC Bioinformatics.

Genomic Evolution of Vesicular Stomatitis Virus Strains with Differences in Adaptability

C. Wilke, I. Novella, Tong Zhou, 2010, Journal of Virology.

Biological Basis of miRNA Action when Their Targets Are Located in Human Protein Coding Region

W. Gu, Xueying Xie, Xiaofei Wang, 2013, PloS one.

Translation Efficiency in Upstream Region of microRNA Targets in Arabidopsis thaliana

W. Gu, Xueying Xie, Gurunadh Parinandi, 2012, Evolutionary bioinformatics online.

The role of RNA structure at 5′ untranslated region in microRNA-mediated gene regulation

W. Gu, Xueying Xie, Jae-Hong Ko, 2014, RNA.

Reduced stability of mRNA secondary structure near the translation-initiation site in dsDNA viruses

C. Wilke, Tong Zhou, 2011, BMC Evolutionary Biology.

The impact of RNA structure on coding sequence evolution in both bacteria and eukaryotes

W. Gu, Jae-Hong Ko, Ting Wang, 2014, BMC Evolutionary Biology.

Codon usage in genes coding for proteins with different tertiary structures

Xiao Sun, Zuhong Lu, W. Gu, 2002 .

Synonymous codon usage in genes coding for proteins with different folding types

Xiao Sun, Zuhong Lu, W. Gu, 2002, Proceedings of the Second Joint 24th Annual Conference and the Annual Fall Meeting of the Biomedical Engineering Society] [Engineering in Medicine and Biology.

Cluster analysis of the codon use frequency of MHC genes from different species.

Xiao Sun, Tong Zhou, Zuhong Lu, 2002, Bio Systems.

The relationship between synonymous codon usage and protein structure in Escherichia coli and Homo sapiens.

Xiao Sun, Tong Zhou, Zuhong Lu, 2004, Bio Systems.

Ion Channel Gene Expression in Lung Adenocarcinoma: Potential Role in Prognosis and Diagnosis

Tong Zhou, Jae-Hong Ko, Wanjun Gu, 2014, PloS one.

Expression profiling of ion channel genes predicts clinical outcome in breast cancer

Tong Zhou, Jae-Hong Ko, Wanjun Gu, 2013, Molecular Cancer.

Translationally optimal codons associate with structurally sensitive sites in proteins.

Tong Zhou, Claus O Wilke, C. Wilke, 2009, Molecular biology and evolution.

Ion channel gene expression predicts survival in glioma patients

Tong Zhou, Jae-Hong Ko, Wanjun Gu, 2015, Scientific Reports.

Contact Density Affects Protein Evolutionary Rate from Bacteria to Animals

Tong Zhou, Claus O. Wilke, C. Wilke, 2008, Journal of Molecular Evolution.

Selection on synonymous sites for increased accessibility around miRNA binding sites in plants.

W. Gu, Xueying Xie, Xiaofei Wang, 2012, Molecular biology and evolution.

A Universal Trend of Reduced mRNA Stability near the Translation-Initiation Site in Prokaryotes and Eukaryotes

Tong Zhou, Claus O. Wilke, Wanjun Gu, 2010, PLoS Comput. Biol..

The impact of RNA structure on coding sequence evolution in both bacteria and eukaryotes

W. Gu, Jae-Hong Ko, Ting Wang, 2014, BMC Evolutionary Biology.

Detecting positive and purifying selection at synonymous sites in yeast and worm.

Tong Zhou, Claus O Wilke, Wanjun Gu, 2010, Molecular biology and evolution.

Detecting Clusters of Mutations

Tong Zhou, Claus O. Wilke, C. Wilke, 2008, PloS one.

Analysis of synonymous codon usage in SARS Coronavirus and other viruses in the Nidovirales

Xiao Sun, Tong Zhou, Zuhong Lu, 2004, Virus Research.

Expression Profiling of Mitochondrial Voltage-Dependent Anion Channel-1 Associated Genes Predicts Recurrence-Free Survival in Human Carcinomas

Tong Zhou, Jae-Hong Ko, Wanjun Gu, 2014, PloS one.

Quantifying circular RNA expression from RNA‐seq data using model‐based framework

Jing Zhou, Tong Zhou, Xiaofeng Yin, 2017, Bioinform..

Synonymous codon usage in environmental chlamydia UWE25 reflects an evolutional divergence from pathogenic chlamydiae.

Xiao Sun, Zuhong Lu, Tong Zhou, 2006, Gene.

Analysis of synonymous codon usage in H5N1 virus and other influenza A viruses.

Xiao Sun, Zuhong Lu, W. Gu, 2005, Bio Systems.

Expression profile of mitochondrial voltage-dependent anion channel-1 (VDAC1) influenced genes is associated with pulmonary hypertension

Jae-Hong Ko, D. Fraidenburg, Jeongyoon Choi, 2017, The Korean journal of physiology & pharmacology : official journal of the Korean Physiological Society and the Korean Society of Pharmacology.

Evolutionary selection on synonymous codons in RNA G-quadruplex structural region

Zuhong Lu, W. Gu, Tong Zhou, 2021, bioRxiv.

Support vector machine for classification of meiotic recombination hotspots and coldspots in Saccharomyces cerevisiae based on codon composition

Xiao Sun, Zuhong Lu, Tong Zhou, 2006, BMC Bioinformatics.

The Correlation between Recombination Rate and Codon Bias in Yeast Mainly Results from Mutational Bias Associated with Recombination Rather than Hill-Robertson Interference

Tong Zhou, Z.H. Lu, X. Sun, 2005, 2005 IEEE Engineering in Medicine and Biology 27th Annual Conference.

Detecting positive and purifying selection at synonymous sites in yeast and worm.

C. Wilke, W. Gu, Tong Zhou, 2010, Molecular biology and evolution.