D. Davis

发表

Synthesis and studies on the effect of 2-thiouridine and 4-thiouridine on sugar conformation and RNA duplex stability.

R. Kumar, D. Davis, R. Kumar, 1997, Nucleic acids research.

Proteolytic refolding of the HIV‐1 capsid protein amino‐terminus facilitates viral core assembly

W. Sundquist, T. Stemmler, K. Albertine, 1998, The EMBO journal.

Structural effects of hypermodified nucleosides in the Escherichia coli and human tRNALys anticodon loop: the effect of nucleosides s2U, mcm5U, mcm5s2U, mnm5s2U, t6A, and ms2t6A.

D. Davis, P. C. Durant, A. Bajji, 2005, Biochemistry.

STRUCTURAL STUDIES OF 2-THIOURIDINE IN RNA

D. Davis, R. K. Kumar, 1997 .

Structure and Ubiquitin Interactions of the Conserved Zinc Finger Domain of Npl4*

W. Sundquist, T. Stemmler, H. Meyer, 2003, Journal of Biological Chemistry.

Recognition of functional groups in an RNA helix by a class I tRNA synthetase.

J. A. Holland, Y. Hou, X. Zhang, 2000, RNA.

Probing the influence of hypermodified residues within the tRNA3(Lys) anticodon stem loop interacting with the A-loop primer sequence from HIV-1.

T. Cheatham, R. Galindo-Murillo, D. Davis, 2016, Biochimica et biophysica acta.

Structural Features of tRNALys Favored by Anticodon Nuclease as Inferred from Reactivities of Anticodon Stem and Loop Substrate Analogs*

G. Kaufmann, D. Davis, M. Amitsur, 2002, The Journal of Biological Chemistry.

An important 2'-OH group for an RNA-protein interaction.

J. A. Holland, Y. Hou, X. Zhang, 2001, Nucleic acids research.

The effect of pseudouridine and pH on the structure and dynamics of the anticodon stem-loop of tRNA(Lys,3).

D. Davis, P. C. Durant, 1997, Nucleic acids symposium series.

Introduction of hypermodified nucleotides in RNA.

D. Davis, A. Bajji, 2005, Methods in molecular biology.

Three-dimensional solution structure of conotoxin psi-PIIIE, an acetylcholine gated ion channel antagonist.

M. Foster, C. Ireland, B. Olivera, 1998, Biochemistry.

Impact of the saponin adjuvant QS-21 and aluminium hydroxide on the immunogenicity of recombinant OspA and OspB of Borrelia burgdorferi.

C. Pavia, C. Kensil, D. Davis, 1994, Vaccine.

Common metal ion coordination in LIM domain proteins.

H. A. Louis, M. Beckerle, D. Winge, 1994, Biochemistry.

Isolation and structure elucidation of an epoxide derivative of the hypermodified nucleoside queuosine from Escherichia coli transfer RNA.

C. G. Edmonds, P. Crain, J. McCloskey, 1987, The Journal of biological chemistry.

Hypermodified nucleosides in the anticodon of tRNALys stabilize a canonical U-turn structure.

D. Davis, P. C. Durant, M. Sundaram, 2000, Biochemistry.

Synthesis of nucleotide 5'-diphosphates from 5'-O-tosyl nucleosides

V. Davisson, C. Poulter, D. Davis, 1987 .

Structure and dynamics of MMI linked nucleotides

R. Griffey, V. Mohan, D. Davis, 1995 .

Structural and Energetic Analysis of 2-Aminobenzimidazole Inhibitors in Complex with the Hepatitis C Virus IRES RNA Using Molecular Dynamics Simulations

Niel M. Henriksen, Thomas E. Cheatham, Hamed S. Hayatshahi, 2014, J. Chem. Inf. Model..

Molecular dynamics re-refinement of two different small RNA loop structures using the original NMR data suggest a common structure

Niel M. Henriksen, T. Cheatham III, D. Davis, 2012, Journal of biomolecular NMR.

Inhibitor-induced structural change in the HCV IRES domain IIa RNA

R. Griffey, T. Cheatham, J. Skalicky, 2010, Proceedings of the National Academy of Sciences.

Characterization of canine humoral immune responses to outer surface protein subunit vaccines and to natural infection by Lyme disease spirochetes.

D. Davis, R. Coughlin, P. Bulger, 1995, The Journal of infectious diseases.

Stabilization of the anticodon stem-loop of tRNALys,3 by an A+-C base-pair and by pseudouridine.

D. Davis, D R Davis, P C Durant, 1999, Journal of molecular biology.

Synthesis and biophysical characterization of tRNA(Lys,3) anticodon stem-loop RNAs containing the mcm(5)s(2)U nucleoside.

D. Davis, A. Bajji, 2000, Organic letters.

Biophysical and Conformational Properties of Modified Nucleosides in RNA (Nuclear Magnetic Resonance Studies)

D. Davis, 1998 .

Surface plasmon resonance kinetic studies of the HIV TAR RNA kissing hairpin complex and its stabilization by 2-thiouridine modification.

T. M. Nair, D G Myszka, D. Myszka, 2000, Nucleic acids research.

Synthesis of Oligoribonucleotides Containing 2-Thiouridine: Incorporation of 2-Thiouridine Phosphoramidite without Base Protection

D. Davis, R. K. Kumar, 1995 .

6.19 – Nucleoside Analogues

D. Davis, 2010 .

15N-labeled 5S RNA. Identification of uridine base pairs in Escherichia coli 5S RNA by 1H-15N multiple quantum NMR.

C. Poulter, S. Nishimura, Z. Yamaizumi, 1989, Biochemistry.

Synthesis and characterization of the native anticodon domain of E. coli TRNA(Lys): simultaneous incorporation of modified nucleosides mnm(5)s(2)U, t(6)A, and pseudouridine using phosphoramidite chemistry.

P. Crain, D. Davis, M. Sundaram, 2000, The Journal of organic chemistry.

An RNA complex of the HIV-1 A-loop and tRNA(Lys,3) is stabilized by nucleoside modifications.

D. Myszka, D. Davis, A. Bajji, 2002, Journal of the American Chemical Society.

Synthesis of the tRNA(Lys,3) anticodon stem-loop domain containing the hypermodified ms2t6A nucleoside.

D. Davis, A. Bajji, 2002, The Journal of organic chemistry.

Structural basis of pyrimidine specificity in the MS2 RNA hairpin-coat-protein complex.

L. Liljas, P. Stockley, K. Tārs, 2001, RNA.

15N-labeled tRNA. Identification of dihydrouridine in Escherichia coli tRNAfMet, tRNALys, and tRNAPhe by 1H-15N two-dimensional NMR.

R. Griffey, C. Poulter, S. Nishimura, 1986, The Journal of biological chemistry.

Measuring antiviral activity of benzimidazole molecules that alter IRES RNA structure with an infectious hepatitis C virus chimera expressing Renilla luciferase.

C. Hagedorn, Ling Lu, Li-Qing Xiao, 2011, Antiviral Research.

1H-15N NMR studies of Escherichia coli tRNA(Phe) from hisT mutants: a structural role for pseudouridine.

C. Poulter, D. Davis, 1991, Biochemistry.

Isopentenyldiphosphate isomerase. Mechanism of active-site-directed irreversible inhibition by 3-(fluoromethyl)-3-butenyl diphosphate

C. Poulter, D. Davis, M. Muehlbacher, 1989 .

An RNA model system for investigation of pseudouridine stabilization of the codon-anticodon interaction in tRNALys, tRNAHis and tRNATyr.

C. Veltri, L. Nielsen, D. Davis, 1998, Journal of biomolecular structure & dynamics.

Stabilization ofRNAstacking bypseudouridine

D. Davis, 1995 .

15N-labeled Escherichia coli tRNAfMet, tRNAGlu, tRNATyr, and tRNAPhe. Double resonance and two-dimensional NMR of N1-labeled pseudouridine.

R. Griffey, A. Bax, C. Poulter, 1985, The Journal of biological chemistry.

Stabilization of RNA stacking by pseudouridine.

D. Davis, 1995, Nucleic acids research.

Structure of the Tsg101 UEV domain in complex with the PTAP motif of the HIV-1 p6 protein

Wesley I. Sundquist, Darrell R. Davis, W. Sundquist, 2002, Nature Structural Biology.

Structure and functional interactions of the Tsg101 UEV domain

Rebecca L Rich, David G Myszka, W. Sundquist, 2002, The EMBO journal.

Ubiquitin interactions of NZF zinc fingers

Scott D Emr, W. Sundquist, S. Emr, 2004, The EMBO journal.

Parallel dimerization of a PrrC-anticodon nuclease region implicated in tRNALys recognition

G. Kaufmann, M. Chai, S. Blanga-Kanfi, 2007, Nucleic acids research.

Enhanced expression, secretion, and large-scale purification of recombinant HIV-1 gp120 in insect cell using the baculovirus egt and p67 signal peptides.

D. Davis, C. I. Murphy, J. Seals, 1993, Protein expression and purification.

Conformational flexibility in RNA: the role of dihydrouridine.

J. McCloskey, J A McCloskey, D. Davis, 1996, Nucleic acids research.

Structure and functional interactions of the Tsg101 UEV domain

W. Sundquist, R. Rich, D. Myszka, 2002, The EMBO journal.

NMR-based mapping of disulfide bridges in cysteine-rich peptides: application to the mu-conotoxin SxIIIA.

D. Yoshikami, G. Bulaj, B. Olivera, 2008, Journal of the American Chemical Society.

Mutational analysis of the metal sites in an LIM domain.

H. A. Louis, M. Beckerle, D. Winge, 1994, The Journal of biological chemistry.

Therapeutic Targeting of HCV Internal Ribosomal Entry Site RNA

P. Seth, D. Davis, 2011, Antiviral chemistry & chemotherapy.

Altered structure of the DNA duplex recognized by yeast transcription factor Reb1p.

D. Stillman, D. Davis, 1997, Nucleic acids research.

Corrigendum: Proteolytic refolding of the HIV-1 capsid protein amino-terminus facilitates viral core assembly (The EMBO Journal (1998) 17, (1555-1568))

W. Sundquist, K. Albertine, U. V. Schwedler, 2000 .

Therapeutic Targeting of HCV Internal Ribosomal Entry Site RNA

P. Seth, D. Davis, 2011, Antiviral chemistry & chemotherapy.