M. Borowiak

发表

Performance and Accuracy of Four Open-Source Tools for In Silico Serotyping of Salmonella spp. Based on Whole-Genome Short-Read Sequencing Data

Simon H. Tausch, I. Szabó, B. Malorny, 2019, Applied and Environmental Microbiology.

Cell-Free Systems Based on CHO Cell Lysates: Optimization Strategies, Synthesis of “Difficult-to-Express” Proteins and Future Perspectives

L. Thoring, S. Kubick, M. Stech, 2016, PloS one.

Whole genome sequencing reveals extended natural transformation in Campylobacter impacting diagnostics and the pathogens adaptive potential

K. Stingl, Lennard Epping, T. Semmler, 2020, Scientific Reports.

Identification of a novel transposon-associated phosphoethanolamine transferase gene, mcr-5, conferring colistin resistance in d-tartrate fermenting Salmonella enterica subsp. enterica serovar Paratyphi B

R. Hendriksen, I. Szabó, J. Hammerl, 2017, The Journal of antimicrobial chemotherapy.

Development of a Novel mcr-6 to mcr-9 Multiplex PCR and Assessment of mcr-1 to mcr-9 Occurrence in Colistin-Resistant Salmonella enterica Isolates From Environment, Feed, Animals and Food (2011–2018) in Germany

I. Szabó, J. Hammerl, B. Malorny, 2020, Frontiers in Microbiology.

Four European Salmonella Typhimurium datasets collected to develop WGS-based source attribution methods

T. Dallman, R. Kaas, P. Leekitcharoenphon, 2020, Scientific Data.

German-Wide Interlaboratory Study Compares Consistency, Accuracy and Reproducibility of Whole-Genome Short Read Sequencing

Simon H. Tausch, K. Stingl, B. Malorny, 2020, bioRxiv.

Detection of VIM-1-Producing Enterobacter cloacae and Salmonella enterica Serovars Infantis and Goldcoast at a Breeding Pig Farm in Germany in 2017 and Their Molecular Relationship to Former VIM-1-Producing S. Infantis Isolates in German Livestock Production

I. Szabó, B. Tenhagen, B. Malorny, 2019, mSphere.

Multiplex PCR for detection of plasmid-mediated colistin resistance determinants, mcr-1, mcr-2, mcr-3, mcr-4 and mcr-5 for surveillance purposes

P. Leekitcharoenphon, A. Carattoli, L. Villa, 2018, Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin.

Characterization of mcr-5-Harboring Salmonella enterica subsp. enterica Serovar Typhimurium Isolates from Animal and Food Origin in Germany

I. Szabó, J. Hammerl, B. Malorny, 2019, Antimicrobial Agents and Chemotherapy.

What WGS Reveals about Salmonella enterica subsp. enterica in Wildlife in Germany

Simon H. Tausch, I. Szabó, B. Malorny, 2021, Microorganisms.

Comparative genomics of Salmonella enterica subsp. diarizonae serovar 61:k:1,5,(7) reveals lineage-specific host adaptation of ST432

Simon H. Tausch, A. Flieger, I. Szabó, 2021, Microbial genomics.

Arcanobacterium buesumense sp. nov., isolated from an anal swab of a male harbour seal (Phoca vitulina).

U. Siebert, P. Wohlsein, C. Lämmler, 2022, International journal of systematic and evolutionary microbiology.

Typing methods based on whole genome sequencing data

Simon H. Tausch, Burkhard Malorny, Carlus Deneke, 2020, One Health Outlook.

Epidemiological analysis of Arcanobacterium phocae isolated from cases of mink dermatitis of a single farm.

C. Lämmler, B. Malorny, A. A. Hassan, 2020, Veterinary microbiology.

Arcanobacterium bovis sp. nov., isolated from the milk of a cow with mastitis.

P. Kämpfer, C. Lämmler, H. Busse, 2020, International journal of systematic and evolutionary microbiology.

Arcanobacterium pinnipediorum Strain DSM 28752 Isolated from a Harbour Seal: Complete Genome Sequence

U. Siebert, C. Ewers, C. Lämmler, 2023, Microbiology resource announcements.

Complete Genome Sequence of Arcanobacterium phocisimile Strain DSM 26142, Isolated from a Harbor Seal

U. Siebert, C. Lämmler, B. Malorny, 2021, Microbiology resource announcements.

Complete Genome Sequence of Arcanobacterium sp. Strain 2701, Isolated from a Harbor Seal

U. Siebert, C. Lämmler, B. Malorny, 2020, Microbiology Resource Announcements.

The Spatiotemporal Dynamics and Microevolution Events That Favored the Success of the Highly Clonal Multidrug-Resistant Monophasic Salmonella Typhimurium Circulating in Europe

Sangeeta Banerji, M. Gourmelon, E. Litrup, 2021, Frontiers in Microbiology.

Genomic Insights into the Mobilome and Resistome of Sentinel Microorganisms Originating from Farms of Two Different Swine Production Systems

A. Álvarez‐Ordoñez, B. Malorny, J. F. Cobo-Díaz, 2022, Microbiology spectrum.

Species-Specific Quality Control, Assembly and Contamination Detection in Microbial Isolate Sequences with AQUAMIS

Simon H. Tausch, B. Malorny, H. Brendebach, 2021, Genes.

Final report of ENGAGE ‐ Establishing Next Generation sequencing Ability for Genomic analysis in Europe

Alessandra Longo, Yue Tang, Burkhard Malorny, 2018, EFSA Supporting Publications.

Toward an Integrated Genome-Based Surveillance of Salmonella enterica in Germany

Simon H. Tausch, A. Sing, J. Linde, 2021, Frontiers in Microbiology.

Outcome of Different Sequencing and Assembly Approaches on the Detection of Plasmids and Localization of Antimicrobial Resistance Genes in Commensal Escherichia coli

Simon H. Tausch, S. Otani, J. Hammerl, 2021, Microorganisms.

The blaNDM-1-Carrying IncA/C2 Plasmid Underlies Structural Alterations and Cointegrate Formation In Vivo

I. Szabó, B. Malorny, B. Guerra, 2019, Antimicrobial Agents and Chemotherapy.

In Vivo Transfer and Microevolution of Avian Native IncA/C2 blaNDM-1-Carrying Plasmid pRH-1238 during a Broiler Chicken Infection Study

I. Szabó, B. Malorny, B. Guerra, 2018, Antimicrobial Agents and Chemotherapy.

mcr-5 and a novel mcr-5.2 variant in Escherichia coli isolates from food and food-producing animals, Germany, 2010 to 2017

B. Tenhagen, J. Hammerl, B. Malorny, 2018, The Journal of antimicrobial chemotherapy.

Molecular Tracing to Find Source of Protracted Invasive Listeriosis Outbreak, Southern Germany, 2012–2016

Burkhard Malorny, Sylvia Kleta, Sascha Al Dahouk, 2017, Emerging infectious diseases.

VIM-1-producing Salmonella Infantis isolated from swine and minced pork meat in Germany

I. Szabó, J. Hammerl, B. Malorny, 2017, The Journal of antimicrobial chemotherapy.

Complete Genome Sequence of an Avian Native NDM-1-Producing Salmonella enterica subsp. enterica Serovar Corvallis Strain

I. Szabó, B. Malorny, B. Guerra, 2018, Genome Announcements.

Complete Genome Sequence of a VIM-1-Producing Salmonella enterica subsp. enterica Serovar Infantis Isolate Derived from Minced Pork Meat

I. Szabó, J. Hammerl, B. Malorny, 2018, Genome Announcements.

Case Report: Vibrio fluvialis isolated from a wound infection after a piercing trauma in the Baltic Sea

E. Strauch, M. Borowiak, I. Klempien, 2022, Access microbiology.

Salmonellosis outbreak with novel Salmonella enterica subspecies enterica serotype (11:z41:e,n,z15) attributable to sesame products in five European countries, 2016 to 2017

S. Nair, T. Dallman, J. Mossong, 2019, Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin.

Reply to Li et al., “GC Content-Associated Sequencing Bias Caused by Library Preparation Method May Infrequently Affect Salmonella Serotype Prediction Using SeqSero2”

Simon H. Tausch, I. Szabó, B. Malorny, 2020, Applied and Environmental Microbiology.

First complete genome sequence and comparative analysis of Salmonella enterica subsp. diarizonae serovar 61:k:1,5,(7) indicates host adaptation traits to sheep

Simon H. Tausch, I. Szabó, B. Malorny, 2019, Gut Pathogens.

Disentangling outbreaks using whole-genome sequencing: concurrent multistate outbreaks of Salmonella Kottbus in Germany, 2017

A. V. von Laer, K. Michaelis, C. Frank, 2020, Epidemiology and Infection.

Complete Genome Sequence of Salmonella enterica subsp. diarizonae Serovar 61:k:1,5,(7) Strain 14-SA00836-0, Isolated from Human Urine

Simon H. Tausch, A. Flieger, B. Malorny, 2020, Microbiology Resource Announcements.

I. Szabó, B. Tenhagen, B. Malorny, 2019, mSphere.

Genetic and Phenotypic Virulence Potential of Non-O1/Non-O139 Vibrio cholerae Isolated from German Retail Seafood

E. Strauch, M. Borowiak, C. Deneke, 2023, Microorganisms.