C. Deneke

发表

Performance and Accuracy of Four Open-Source Tools for In Silico Serotyping of Salmonella spp. Based on Whole-Genome Short-Read Sequencing Data

Simon H. Tausch, I. Szabó, B. Malorny, 2019, Applied and Environmental Microbiology.

Bound-free e+e- pair creation with a linearly polarized laser field and a nuclear field

C. Muller, C. Deneke, 2008, 0807.4460.

Influence of Subirrigation on Postproduction Longevity of Poinsettias

C. Deneke, Bridget R. Behe, 2000 .

Whole genome sequencing reveals extended natural transformation in Campylobacter impacting diagnostics and the pathogens adaptive potential

K. Stingl, Lennard Epping, T. Semmler, 2020, Scientific Reports.

Fishing in the Soup – Pathogen Detection in Food Safety Using Metabarcoding and Metagenomic Sequencing

Simon H. Tausch, J. Hammerl, B. Malorny, 2019, Front. Microbiol..

PaPrBaG: A random forest approach for the detection of novel pathogens from NGS data

R. Rentzsch, B. Renard, C. Deneke, 2016 .

Development of a Novel mcr-6 to mcr-9 Multiplex PCR and Assessment of mcr-1 to mcr-9 Occurrence in Colistin-Resistant Salmonella enterica Isolates From Environment, Feed, Animals and Food (2011–2018) in Germany

I. Szabó, J. Hammerl, B. Malorny, 2020, Frontiers in Microbiology.

Evaluation of a real-time PCR assay for the differentiation of Bacillus cereus group species

C. Deneke, H. Frentzel, Y. Kelner-Burgos, 2021, Food Control.

German-Wide Interlaboratory Study Compares Consistency, Accuracy and Reproducibility of Whole-Genome Short Read Sequencing

Simon H. Tausch, K. Stingl, B. Malorny, 2020, bioRxiv.

Characterization of mcr-5-Harboring Salmonella enterica subsp. enterica Serovar Typhimurium Isolates from Animal and Food Origin in Germany

I. Szabó, J. Hammerl, B. Malorny, 2019, Antimicrobial Agents and Chemotherapy.

What WGS Reveals about Salmonella enterica subsp. enterica in Wildlife in Germany

Simon H. Tausch, I. Szabó, B. Malorny, 2021, Microorganisms.

Comparative genomics of Salmonella enterica subsp. diarizonae serovar 61:k:1,5,(7) reveals lineage-specific host adaptation of ST432

Simon H. Tausch, A. Flieger, I. Szabó, 2021, Microbial genomics.

Typing methods based on whole genome sequencing data

Simon H. Tausch, Burkhard Malorny, Carlus Deneke, 2020, One Health Outlook.

Comparison of Application Methods of Paclobutrazol for Height Control of Potted Tulips

C. Deneke, G. Keever, 1992 .

Direct identification and molecular characterization of zoonotic hazards in raw milk by metagenomics using Brucella as a model pathogen

S. Al Dahouk, B. Malorny, M. Gwida, 2021, Microbial genomics.

PaPrBaG: A machine learning approach for the detection of novel pathogens from NGS data

Bernhard Y. Renard, Robert Rentzsch, Carlus Deneke, 2017, Scientific Reports.

Proficiency Testing of Metagenomics-Based Detection of Food-Borne Pathogens Using a Complex Artificial Sequencing Dataset

Simon H. Tausch, Martin Beer, Paul D. Cotter, 2020, Frontiers in Microbiology.

Predicting bacterial virulence factors - evaluation of machine learning and negative data strategies

Bernhard Y. Renard, Carlus Deneke, Andreas Nitsche, 2020, Briefings Bioinform..

Heritable Differences in Postproduction Quality of Pelargonium ×domesticum

C. Deneke, R. Craig, K. Evensen, 1992 .

A step forward for Shiga toxin-producing Escherichia coli identification and characterization in raw milk using long-read metagenomics

S. Delannoy, P. Fach, B. Malorny, 2022, Microbial genomics.

Effect of ribosome shielding on mRNA stability

Reinhard Lipowsky, Angelo Valleriani, Carlus Deneke, 2013, Physical biology.

Genomic Insights into the Mobilome and Resistome of Sentinel Microorganisms Originating from Farms of Two Different Swine Production Systems

A. Álvarez‐Ordoñez, B. Malorny, J. F. Cobo-Díaz, 2022, Microbiology spectrum.

Species-Specific Quality Control, Assembly and Contamination Detection in Microbial Isolate Sequences with AQUAMIS

Simon H. Tausch, B. Malorny, H. Brendebach, 2021, Genes.

Complex Degradation Processes Lead to Non-Exponential Decay Patterns and Age-Dependent Decay Rates of Messenger RNA

R. Lipowsky, A. Valleriani, C. Deneke, 2013, PloS one.

Toward an Integrated Genome-Based Surveillance of Salmonella enterica in Germany

Simon H. Tausch, A. Sing, J. Linde, 2021, Frontiers in Microbiology.

Outcome of Different Sequencing and Assembly Approaches on the Detection of Plasmids and Localization of Antimicrobial Resistance Genes in Commensal Escherichia coli

Simon H. Tausch, S. Otani, J. Hammerl, 2021, Microorganisms.

The blaNDM-1-Carrying IncA/C2 Plasmid Underlies Structural Alterations and Cointegrate Formation In Vivo

I. Szabó, B. Malorny, B. Guerra, 2019, Antimicrobial Agents and Chemotherapy.

Phenotypic and Genotypic Properties of Fluoroquinolone-Resistant, qnr-Carrying Escherichia coli Isolated from the German Food Chain in 2017

J. Hammerl, B. Malorny, S. Schwarz, 2021, Microorganisms.

Lepton pair production in high-frequency laser fields

Guido R. Mocken, C. Keitel, K. Hatsagortsyan, 2009 .

Transient Phenomena in Gene Expression after Induction of Transcription

A. Valleriani, Sophia Rudorf, C. Deneke, 2012, PloS one.

Translatability of WGS typing results can simplify data exchange for surveillance and control of Listeria monocytogenes

Stefanie Lüth, Sylvia Kleta, Carlus Deneke, 2020, Microbial genomics.

Muon-pair creation by two x-ray laser photons in the field of an atomic nucleus.

C. Keitel, C. Müller, C. Deneke, 2008, Physical review letters.

Decentralized Investigation of Bacterial Outbreaks Based on Hashed cgMLST

Simon H. Tausch, B. Malorny, H. Brendebach, 2021, Frontiers in Microbiology.

Reply to Li et al., “GC Content-Associated Sequencing Bias Caused by Library Preparation Method May Infrequently Affect Salmonella Serotype Prediction Using SeqSero2”

Simon H. Tausch, I. Szabó, B. Malorny, 2020, Applied and Environmental Microbiology.

First complete genome sequence and comparative analysis of Salmonella enterica subsp. diarizonae serovar 61:k:1,5,(7) indicates host adaptation traits to sheep

Simon H. Tausch, I. Szabó, B. Malorny, 2019, Gut Pathogens.

Exploring Long-Read Metagenomics for Full Characterization of Shiga Toxin-Producing Escherichia coli in Presence of Commensal E. coli

S. Delannoy, P. Fach, B. Malorny, 2023, Microorganisms.

Clonal relation between Salmonella enterica subspecies enterica serovar Dublin strains of bovine and food origin in Germany

Simon H. Tausch, J. Linde, I. Szabó, 2023, Frontiers in Veterinary Science.

Identification of knowledge gaps in whole-genome sequence analysis of multi-resistant thermotolerant Campylobacter spp.

K. Stingl, C. Deneke, Marie-Theres Knüver, 2024, BMC genomics.

Genetic and Phenotypic Virulence Potential of Non-O1/Non-O139 Vibrio cholerae Isolated from German Retail Seafood

E. Strauch, M. Borowiak, C. Deneke, 2023, Microorganisms.

Effect of ribosome shielding on mRNA stability

R. Lipowsky, A. Valleriani, C. Deneke, 2013, Physical biology.

Genetic characterization of a multidrug-resistant Salmonella enterica serovar Agona isolated from a dietary supplement in Germany

J. Fischer, Josephine Gruetzke, M. Borowiak, 2023, Frontiers in microbiology.

Complete Genome Sequence of a Salmonella enterica subsp. enterica Serovar Tennessee Strain from Tahini

M. Borowiak, C. Deneke, A. Göhler, 2022, Microbiology resource announcements.