Zhenjiang Fan

发表

3′-UTR Shortening Contributes to Subtype-Specific Cancer Growth by Breaking Stable ceRNA Crosstalk of Housekeeping Genes

S. Oesterreich, H. Park, B. Diergaarde, 2019, bioRxiv.

Alternative Polyadenylation Regulates Patient-specific Tumor Growth by Individualizing the MicroRNA Target Site Landscape

G. Tseng, H. Park, B. Diergaarde, 2019, bioRxiv.

3′-UTR Shortening Contributes to Subtype-Specific Cancer Growth by Breaking Stable ceRNA Crosstalk of Housekeeping Genes

S. Oesterreich, H. Park, B. Diergaarde, 2019, bioRxiv.

Using machine learning to predict ovarian cancer

Taieb Znati, Xiao Zheng, Lujun Chen, 2020, Int. J. Medical Informatics.

scMAPA: Identification of cell-type–specific alternative polyadenylation in complex tissues

Robert M. Morrison, H. Zarour, Yidi Qin, 2022, GigaScience.

Identifying genes with cell-type-specific alternative polyadenylation in multi-cluster single-cell transcriptomics data

Robert M. Morrison, H. Zarour, Yidi Qin, 2020 .

Identifying genes and cell types with dynamic alternative polyadenylation in multi-cluster single-cell transcriptomics data

Yidi Qin, R. Koldamova, Yulong Bai, 2020, bioRxiv.

Machine learning derivation of four computable 24-h pediatric sepsis phenotypes to facilitate enrollment in early personalized anti-inflammatory clinical trials

John C. Lin, D. Notterman, J. Carcillo, 2022, Critical Care.

Constructing Tumor Immune Microenvironment and Identifying the Immune-Related Prognostic Signatures in Colorectal Cancer Using Multi-omics Data

Tao Zhang, Zhenjiang Fan, Bingbing Fan, 2021 .

Causal inference using deep-learning variable selection identifies and incorporates direct and indirect causalities in complex biological systems

J. Carcillo, P. Benos, S. Canna, 2021, bioRxiv.

The microRNA target site landscape is a novel molecular feature associating alternative polyadenylation with immune evasion activity in breast cancer

George C. Tseng, Zhenjiang Fan, Hyun Jung Park, 2020, Briefings Bioinform..

Identifying genes and cell types with dynamic alternative polyadenylation in multi-cluster single-cell transcriptomics data

Yidi Qin, R. Koldamova, Yulong Bai, 2020, bioRxiv.

Transcriptional Programs Driving Shear Stress-Induced Differentiation of Kidney Proximal Tubule Cells in Culture

J. Locker, O. Weisz, H. Park, 2020, Frontiers in Physiology.

Deep neural networks with knockoff features identify nonlinear causal relations and estimate effect sizes in complex biological systems

J. Carcillo, P. Benos, S. Canna, 2022, GigaScience.

Derivation of four computable 24-hour pediatric sepsis phenotypes to facilitate personalized enrollment in early precise anti-inflammatory clinical trials

John C. Lin, D. Notterman, J. Carcillo, 2021, medRxiv.

Cell-type-specific alternative polyadenylation (APA) genes reveal the function of dynamic APA in complex tissues

Robert M. Morrison, Yidi Qin, R. Koldamova, 2020 .

3ʹ-UTR shortening disrupts ceRNA crosstalk of housekeeping genes resulting in subtype-specific breast cancer development

H. Park, B. Diergaarde, Soyeon Kim, 2019 .