A. M. Mustoe

发表

Functional complexity and regulation through RNA dynamics

Hashim M. Al-Hashimi, Jeetender Chugh, H. Al‐Hashimi, 2012, Nature.

3D maps of RNA interhelical junctions

C. Brooks, H. Al‐Hashimi, M. H. Bailor, 2011, Nature Protocols.

Use of a global metabolic network to curate organismal metabolic networks

R. Guimerà, L. Amaral, A. Pah, 2013, Scientific Reports.

Secondary structure encodes a cooperative tertiary folding funnel in the Azoarcus ribozyme

C. Brooks, H. Al‐Hashimi, A. M. Mustoe, 2015, Nucleic acids research.

Direct identification of base-paired RNA nucleotides by correlated chemical probing

K. Weeks, N. Dokholyan, A. Krokhotin, 2017, RNA.

RNA base-pairing complexity in living cells visualized by correlated chemical probing

K. Weeks, Patrick S. Irving, Samuel W. Olson, 2019, Proceedings of the National Academy of Sciences.

Quantitative prediction of variant effects on alternative splicing in MAPT using endogenous pre-messenger RNA structure probing

D. Mathews, K. Weeks, Lela Lackey, 2022, eLife.

An RNA structure-mediated, posttranscriptional model of human α-1-antitrypsin expression

K. Weeks, Lela Lackey, A. Laederach, 2017, Proceedings of the National Academy of Sciences.

Global 5′-UTR RNA structure regulates translation of a SERPINA1 mRNA

K. Weeks, Lela Lackey, A. Laederach, 2022, Nucleic acids research.

New insights into the fundamental role of topological constraints as a determinant of two-way junction conformation

C. Brooks, H. Al‐Hashimi, M. H. Bailor, 2011, Nucleic acids research.

Tuning RNA folding and function through rational design of junction topology

Charles L. Brooks III, N. Walter, A. Morriss-Andrews, 2017, Nucleic acids research.

Coarse Grained Models Reveal Essential Contributions of Topological Constraints to the Conformational Free Energy of RNA Bulges

Hashim M. Al-Hashimi, Charles L. Brooks, C. Brooks, 2014, The journal of physical chemistry. B.

Discovery of a large-scale, cell-state-responsive allosteric switch in the 7SK RNA using DANCE-MaP.

K. Weeks, D. Margolis, Anne-Marie Turner, 2022, Molecular cell.

Large-scale allosteric switch in the 7SK RNA regulates transcription in response to growth and stress

K. Weeks, D. Margolis, Anne-Marie Turner, 2021, bioRxiv.

Natural selection shapes codon usage in the human genome

D. Goldstein, R. Dhindsa, Brett R Copeland, 2019, bioRxiv.

Analysis of RNA-protein networks with RNP-MaP defines functional hubs on RNA

K. Weeks, J. M. Calabrese, Anthony M Mustoe, 2020, Nature biotechnology.

Efficient in silico exploration of RNA interhelical conformations using Euler angles and WExplore

Loïc Salmon, C. Brooks, A. Dickson, 2014, Nucleic acids research.

Pervasive Regulatory Functions of mRNA Structure Revealed by High-Resolution SHAPE Probing

Razvan Nutiu, Brant K. Peterson, Steven Busan, 2018, Cell.

Single transcriptional and translational preQ1 riboswitches adopt similar pre-folded ensembles that follow distinct folding pathways into the same ligand-bound structure

J. Wedekind, C. Brooks, H. Al‐Hashimi, 2013, Nucleic acids research.

Hierarchy of RNA functional dynamics.

C. Brooks, H. Al‐Hashimi, Charles L Brooks, 2014, Annual review of biochemistry.

RNP-MaP: In-cell analysis of protein interaction networks defines functional hubs in RNA

K. Weeks, J. M. Calabrese, Chase A. Weidmann, 2020, bioRxiv.

Messenger RNA Structure Regulates Translation Initiation: A Mechanism Exploited from Bacteria to Humans.

K. Weeks, A. Laederach, A. M. Mustoe, 2018, Biochemistry.

RNA base-pairing complexity in living cells visualized by correlated chemical probing

K. Weeks, Anthony M. Mustoe, Kevin M. Weeks, 2019, Proceedings of the National Academy of Sciences.

Topological constraints are major determinants of tRNA tertiary structure and dynamics and provide basis for tertiary folding cooperativity

Hashim M. Al-Hashimi, Charles L. Brooks, C. Brooks, 2014, Nucleic acids research.

Topological constraints: using RNA secondary structure to model 3D conformation, folding pathways, and dynamic adaptation.

C. Brooks, H. Al‐Hashimi, M. H. Bailor, 2011, Current opinion in structural biology.

Noncanonical secondary structure stabilizes mitochondrial tRNA(Ser(UCN)) by reducing the entropic cost of tertiary folding.

C. Brooks, H. Al‐Hashimi, C. Fierke, 2015, Journal of the American Chemical Society.

Single-Molecule Correlated Chemical Probing: A Revolution in RNA Structure Analysis.

K. Weeks, Chase A. Weidmann, A. M. Mustoe, 2023, Accounts of chemical research.

Natural selection shapes codon usage in the human genome

D. Goldstein, R. Dhindsa, Brett R Copeland, 2019, bioRxiv.

Mutation signature filtering enables high-fidelity RNA structure probing at all four nucleobases with DMS

Anthony M Mustoe, A. M. Mustoe, J. Cotter, 2023, bioRxiv.

Direct Duplex Detection: An Emerging Tool in the RNA Structure Analysis Toolbox.

K. Weeks, Anthony M Mustoe, Chase A. Weidmann, 2016, Trends in biochemical sciences.

Mutation signature filtering enables high-fidelity RNA structure probing at all four nucleobases with DMS

Anthony M Mustoe, A. M. Mustoe, David Mitchell, 2023, Nucleic acids research.

Causes, functions, and therapeutic possibilities of RNA secondary structure ensembles and alternative states.

A. M. Mustoe, Irfana Saleem, Ritwika Bose, 2024, Cell chemical biology.