Susan Holmes

发表

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

Francesco Asnicar, Mingxun Wang, Yang Bai, 2019, Nature Biotechnology.

An Interactive Java Statistical Image Segmentation System: GemIdent.

Susan Holmes, Adam Kapelner, Peter P Lee, 2009, Journal of statistical software.

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

Susan Holmes, Paul J. McMurdie, S. Holmes, 2013, PloS one.

Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

Francesco Asnicar, Mingxun Wang, Yang Bai, 2019, Nature Biotechnology.

structSSI: Simultaneous and Selective Inference for Grouped or Hierarchically Structured Data.

Kris Sankaran, Susan Holmes, S. Holmes, 2014, Journal of statistical software.

Ten quick tips for effective dimensionality reduction

Susan Holmes, Lan Huong Nguyen, S. Holmes, 2019, PLoS Comput. Biol..

A Non-Reversible Markov Chain Sampling Method

Radford M. Neal, Persi Diaconis, Susan Holmes, 1997 .

Computational Tools for Evaluating Phylogenetic and Hierarchical Clustering Trees

Susan Holmes, John Chakerian, S. Holmes, 2010, Journal of computational and graphical statistics : a joint publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America.

CytoGLMM: conditional differential analysis for flow and mass cytometry experiments

Susan Holmes, Christof Seiler, Anne-Maud Ferreira, 2020, bioRxiv.

Multivariate Heteroscedasticity Models for Functional Brain Connectivity

Christof Seiler, Susan Holmes, C. Seiler, 2017, bioRxiv.

Statistical Modeling for Practical Pooled Testing During the COVID-19 Pandemic

Claire Donnat, Susan Holmes, Saskia Comess, 2021, Statistical Science.

Supervised topic modeling for predicting molecular substructure from mass spectrometry

Noémie Elhadad, Susan Holmes, Jaan Altosaar, 2021, F1000Research.

DADA2: High resolution sample inference from amplicon data

Susan Holmes, Benjamin J. Callahan, Paul J. McMurdie, 2015, bioRxiv.

CURVATURE AND CONCENTRATION OF HAMILTONIAN MONTE CARLO IN HIGH DIMENSIONS

Christof Seiler, Susan Holmes, Simon Rubinstein-Salzedo, 2014, 1407.1114.

Impaired interferon signaling is a common immune defect in human cancer

Albert Koong, Robert W. Carlson, Susan Holmes, 2009, Proceedings of the National Academy of Sciences.

Statistics for phylogenetic trees.

Susan Holmes, S. Holmes, 2003, Theoretical population biology.

The 15th Genomic Standards Consortium meeting

Adam M. Phillippy, Folker Meyer, Frank Oliver Glöckner, 2013 .

Profile of Immune Cells in Axillary Lymph Nodes Predicts Disease-Free Survival in Breast Cancer

Susan Holmes, H. Kohrt, S. Holmes, 2005, PLoS medicine.

Quantitative, Architectural Analysis of Immune Cell Subsets in Tumor-Draining Lymph Nodes from Breast Cancer Patients and Healthy Lymph Nodes

Susan Holmes, Adam Kapelner, H. Kohrt, 2010, PLoS ONE.

Unusual Codon Bias in Vinyl Chloride Reductase Genes of Dehalococcoides Species

Susan Holmes, Paul J. McMurdie, Alfred M. Spormann, 2007, Applied and Environmental Microbiology.

Forager activation and food availability in harvester ants

Deborah M. Gordon, Susan Holmes, Robert J. Schafer, 2006, Animal Behaviour.

Gene expression diversity among Mycobacterium tuberculosis clinical isolates.

Qian Gao, Susan Holmes, S. Holmes, 2005, Microbiology.

Human NK cell repertoire diversity reflects immune experience and correlates with viral susceptibility

Susan Holmes, Julia Fukuyama, Grace John-Stewart, 2015, Science Translational Medicine.

Multivariate data analysis: The French way

Susan Holmes, S. Holmes, 2008, 0805.2879.

Advancing our understanding of the human microbiome using QIIME.

Rob Knight, Donna Berg-Lyons, James Huntley, 2013, Methods in enzymology.

Strategies for understanding dynamic, personalized profiles of host-derived proteins and microbes from human stool

Kris Sankaran, Susan Holmes, Les Dethlefsen, 2019, bioRxiv.

Colony variation in the collective regulation of foraging by harvester ants.

Adam Guetz, Susan Holmes, Deborah M Gordon, 2011, Behavioral ecology : official journal of the International Society for Behavioral Ecology.

Memory T cells have gene expression patterns intermediate between naive and effector.

Susan Holmes, S. Holmes, Peter P. Lee, 2005, Proceedings of the National Academy of Sciences of the United States of America.

The effect of individual variation on the structure and function of interaction networks in harvester ants

Deborah M. Gordon, Adam Guetz, Noa Pinter-Wollman, 2011, Journal of The Royal Society Interface.

The short-term regulation of foraging in harvester ants

Deborah M. Gordon, Serban Nacu, Susan Holmes, 2008 .