Martin Hemberg

发表

Tutorial: guidelines for the computational analysis of single-cell RNA sequencing data

Tallulah S Andrews, Vladimir Yu Kiselev, Davis McCarthy, 2020, Nature Protocols.

Discrete distributional differential expression (D3E) - a tool for gene expression analysis of single-cell RNA-seq data

Martin Hemberg, Mihails Delmans, M. Hemberg, 2015, BMC Bioinformatics.

Genr8: Architects' Experience with an Emergent Design Tool

Una-May O'Reilly, Achim Menges, Katrin Jonas, 2008, The Art of Artificial Evolution.

Extending Grammatical Evolution to Evolve Digital Surfaces with Genr8

Una-May O'Reilly, Martin Hemberg, Una-May O’Reilly, 2004, EuroGP.

Integrating generative growth and evolutionary computation for form exploration

Una-May O'Reilly, Martin Hemberg, Una-May O’Reilly, 2007, Genetic Programming and Evolvable Machines.

Shape grammars and grammatical evolution for evolutionary design

Anthony Brabazon, Michael O'Neill, Jonathan Byrne, 2009, GECCO.

Perfect sampling of the master equation for gene regulatory networks.

Mauricio Barahona, Martin Hemberg, Mauricio Barahona, 2006, Biophysical journal.

SC3 - consensus clustering of single-cell RNA-Seq data

Mauricio Barahona, Michael T. Schaub, Martin Hemberg, 2016, Nature Methods.

Flexible comparison of batch correction methods for single-cell RNA-seq using BatchBench

Vladimir Yu Kiselev, Martin Hemberg, Stijn van Dongen, 2020, bioRxiv.

M3Drop: dropout-based feature selection for scRNASeq

Martin Hemberg, T S Andrews, M. Hemberg, 2018, Bioinform..

Author response: A robust activity marking system for exploring active neuronal ensembles

Steven F. Maier, Andrew Young, Martin Hemberg, 2016 .

ECSS - Evolutionary Component Surface System A tool for architectural form generation and form optimization

Katrin Jonas, Martin Hemberg, 2006 .

SC3 - consensus clustering of single-cell RNA-Seq data

Mauricio Barahona, Martin Hemberg, Kedar N Natarajan, 2016 .

Evolutionary design using grammatical evolution and shape grammars: designing a shelter

Anthony Brabazon, Erik Hemberg, Jonathan Byrne, 2010 .

Statistical Methods for Single‐Cell RNA‐Sequencing

Martin Hemberg, Tallulah S. Andrews, Vladimir Yu. Kiselev, 2019, Handbook of Statistical Genomics.

scmap - A tool for unsupervised projection of single cell RNA-seq data

Martin Hemberg, Vladimir Yu. Kiselev, M. Hemberg, 2017, bioRxiv.

String-Rewriting Grammars for Evolutionary Architectural Design

Erik Hemberg, Jonathan Byrne, Michael Fenton, 2012 .

Noise characteristics of interlocked repressilators

Mauricio Barahona, Martin Hemberg, 2007, BMC Systems Biology.

GENR8 - A Design Tool for Surface Generation

Peter Nordin, Una-May O'Reilly, Martin Hemberg, 2001 .

A Dominated Coupling From The Past algorithm for the stochastic simulation of networks of biochemical reactions

Mauricio Barahona, Martin Hemberg, Mauricio Barahona, 2008, BMC Systems Biology.

MPRAnator: a web-based tool for the design of massively parallel reporter assay experiments

Naman Jain, Martin Hemberg, Ilias Georgakopoulos-Soares, 2015, bioRxiv.

Noncanonical secondary structures arising from non-B DNA motifs are determinants of mutagenesis.

Sandro Morganella, Martin Hemberg, Serena Nik-Zainal, 2018, Genome research.

A robust activity marking system for exploring active neuronal ensembles

Martin Hemberg, Yingxi Lin, Yonatan A Cooper, 2016, eLife.

High-throughput functional comparison of promoter and enhancer activities

Andreas R. Pfenning, Martin Hemberg, Rory Kirchner, 2016, Genome research.

Integrated genome analysis suggests that most conserved non-coding sequences are regulatory factor binding sites

Gabriel Kreiman, Martin Hemberg, Nicole Cloonan, 2012, Nucleic acids research.

Genome-wide identification and characterization of functional neuronal activity–dependent enhancers

Thomas Vierbuchen, Kyle Kai-How Farh, Martin Hemberg, 2014, Nature Neuroscience.

Conservation of transcription factor binding events predicts gene expression across species

Gabriel Kreiman, Martin Hemberg, M. Hemberg, 2011, Nucleic acids research.

Astrocyte layers in the mammalian cerebral cortex revealed by a single-cell in situ transcriptomic map

Giovanni Coppola, Martin Hemberg, Vitalii Kleshchevnikov, 2020, Nature Neuroscience.

Obstacles to detecting isoforms using full-length scRNA-seq data

Martin Hemberg, M. Hemberg, A. Ferguson-Smith, 2020, Genome Biology.

Quantification of mRNA in single cells and modelling of RT-qPCR induced noise

Martin Hemberg, Anders Ståhlberg, Patrik Rorsman, 2008, BMC Molecular Biology.

Single-cell genomics

Martin Hemberg, 2018, Briefings in functional genomics.

Modelling dropouts allows for unbiased identification of marker genes in scRNASeq experiments

Martin Hemberg, Tallulah S. Andrews, M. Hemberg, 2016 .

Supervised clustering for single-cell analysis

Martin Hemberg, M. Hemberg, Jimmy Tsz Hang Lee, 2019, Nature Methods.

Stochastic kinetics of viral capsid assembly based on detailed protein structures.

Mauricio Barahona, Martin Hemberg, Mauricio Barahona, 2006, Biophysical journal.

The Human Cell Atlas

Roland Eils, Alexander van Oudenaarden, Hans Clevers, 2017, bioRxiv.