Roman A. Laskowski

发表

Detecting cryptically simple protein sequences using the SIMPLE algorithm

John M. Hancock, M. Mar Albà, Roman A. Laskowski, 2002, Bioinform..

PDBsum additions

Karel Berka, Janet M. Thornton, Roman A. Laskowski, 2013, Nucleic Acids Res..

MGOS: A Library for Molecular Geometry and its Operating System pdf

Kokichi Sugihara, Jong Bhak, Joonghyun Ryu, 2019, Comput. Phys. Commun..

BetaSCPWeb: side-chain prediction for protein structures using Voronoi diagrams and geometry prioritization

Deok-Soo Kim, Joonghyun Ryu, Mokwon Lee, 2016, Nucleic Acids Res..

PDBsum new things

Roman A. Laskowski, R. Laskowski, 2008, Nucleic Acids Res..

CATH: comprehensive structural and functional annotations for genome sequences

David A. Lee, Ian Sillitoe, Janet M. Thornton, 2014, Nucleic Acids Res..

BLEEP - potential of mean force describing protein-ligand interactions: I. Generating potential

Janet M. Thornton, John B. O. Mitchell, Roman A. Laskowski, 1999, J. Comput. Chem..

Towards automated structure-based identification of protein ligands

Janet M. Thornton, Roman A. Laskowski, Marian Novotny, 2007 .

An automated protocol for modelling peptide substrates to proteases

Janet M. Thornton, Rodrigo Ochoa, Pilar Cossio, 2020, BMC Bioinform..

Variation of geometrical and physicochemical properties in protein binding pockets and their ligands

Janet M. Thornton, Roman A. Laskowski, Richard J. Morris, 2007, BMC Bioinformatics.

BLEEP - potential of mean force describing protein-ligand interactions: II. Calculation of binding energies and comparison with experimental data

Janet M. Thornton, Mark J. Forster, John B. O. Mitchell, 1999, J. Comput. Chem..

Anatomy of enzyme channels

Karel Berka, Radka Svobodová Vareková, Jaroslav Koca, 2014, BMC Bioinformatics.

Amino acid?base interactions: a three-dimensional analysis of protein?DNA interactions at an atomic level

Nicholas M. Luscombe, Janet M. Thornton, Roman A. Laskowski, 2001, Nucleic Acids Res..

BetaCavityWeb: a webserver for molecular voids and channels

Deok-Soo Kim, Kokichi Sugihara, Mokwon Lee, 2015, Nucleic Acids Res..

PROCHECK: validation of protein‐structure coordinates

Janet M. Thornton, Roman A. Laskowski, Malcolm W. MacArthur, 2012 .

Amino Acid Changes in Disease-Associated Variants Differ Radically from Variants Observed in the 1000 Genomes Project Dataset

Janet M. Thornton, Nick Goldman, Roman A. Laskowski, 2013, PLoS Comput. Biol..

Programs and program systems in wide use

Randy J. Read, Paul D. Adams, Anastassis Perrakis, 2006 .

ProFunc: a server for predicting protein function from 3D structure

Janet M. Thornton, James D. Watson, Roman A. Laskowski, 2005, Nucleic Acids Res..

LigPlot+: Multiple Ligand-Protein Interaction Diagrams for Drug Discovery

Roman A. Laskowski, Mark B. Swindells, M. Swindells, 2011, J. Chem. Inf. Model..

Software Tools for Protein Structure Analysis and Fold Classification

Janet M. Thornton, Christine A. Orengo, Roman A. Laskowski, 1999 .

Integrated Servers for Structure-Informed Function Prediction

Roman A. Laskowski, 2009 .

PDBsum: summaries and analyses of PDB structures

Roman A. Laskowski, R. Laskowski, 2001, Nucleic Acids Res..

[Invited Lecture] Protein Folds and Functions

Janet M. Thornton, Christine A. Orengo, Roman A. Laskowski, 1998, German Conference on Bioinformatics.

Predicting Protein Ligand Binding Sites by Combining Evolutionary Sequence Conservation and 3D Structure

Mona Singh, Thomas A. Funkhouser, Janet M. Thornton, 2009, PLoS Comput. Biol..

PDBsum more: new summaries and analyses of the known 3D structures of proteins and nucleic acids

Janet M. Thornton, Roman A. Laskowski, Victor V. Chistyakov, 2004, Nucleic Acids Res..

Enhancing the functional annotation of PDB structures in PDBsum using key figures extracted from the literature

Roman A. Laskowski, R. Laskowski, 2007, Bioinform..

Dihydrofolate reductase: A potential drug target in trypanosomes and leishmania

Ian H. Gilbert, Janet M. Thornton, Roman A. Laskowski, 1998, J. Comput. Aided Mol. Des..

FunTree: a resource for exploring the functional evolution of structurally defined enzyme superfamilies

Ian Sillitoe, Janet M. Thornton, Christine A. Orengo, 2011, Nucleic Acids Res..

From protein structure to biochemical function?

Janet M. Thornton, James D. Watson, Roman A. Laskowski, 2004, Journal of Structural and Functional Genomics.

LigSearch: a knowledge-based web server to identify likely ligands for a protein target

Janet M. Thornton, Roman A. Laskowski, A. W. Edith Chan, 2013, Acta crystallographica. Section D, Biological crystallography.

Exploring the Evolution of Novel Enzyme Functions within Structurally Defined Protein Superfamilies

Ian Sillitoe, Janet M. Thornton, Christine A. Orengo, 2012, PLoS Comput. Biol..

WSsas: a web service for the annotation of functional residues through structural homologues

Janet M. Thornton, Roman A. Laskowski, David Talavera, 2009, Bioinform..

Error Estimates of Protein Structure Coordinates and Deviations from Standard Geometry by Full-Matrix Refinement of γB- and βB2-Crystallin

David S. Moss, Roman A. Laskowski, Ian J. Tickle, 1998 .

Knowledge-based validation of protein structure coordinates derived by X-ray crystallography and NMR spectroscopy

Janet M. Thornton, Roman A. Laskowski, Malcolm W. MacArthur, 1994 .

BLEEP—potential of mean force describing protein–ligand interactions: I. Generating potential

Janet M. Thornton, John B. O. Mitchell, Roman A. Laskowski, 1999 .

Chopping and Changing: the Evolution of the Flavin-dependent Monooxygenases

Janet M. Thornton, Nicholas Furnham, Roman A. Laskowski, 2016, Journal of molecular biology.

Understanding the molecular machinery of genetics through 3D structures

Janet M. Thornton, Roman A. Laskowski, J. Thornton, 2008, Nature Reviews Genetics.

BLEEP—potential of mean force describing protein–ligand interactions: II. Calculation of binding energies and comparison with experimental data

Janet M. Thornton, Mark J. Forster, John B. O. Mitchell, 1999 .

Sequence-Specific Recognition of DNA by Proteins: Binding Motifs Discovered Using a Novel Statistical/Computational Analysis

David Jakubec, Roman A. Laskowski, Jiri Vondrasek, 2016, PloS one.

The implications of alternative splicing in the ENCODE protein complement

Hagen Blankenburg, Fidel Ramírez, Thomas Lengauer, 2007, Proceedings of the National Academy of Sciences.

Who checks the checkers? Four validation tools applied to eight atomic resolution structures. EU 3-D Validation Network.

Chris Sander, Shoshana J. Wodak, Jean Richelle, 1998, Journal of molecular biology.