John Deck

发表

The founding charter of the Genomic Observatories Network

Renzo Kottmann, Frank Oliver Glöckner, Norman Morrison, 2014, GigaScience.

Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data

Chris Morris, John Kunze, Michel Dumontier, 2017, bioRxiv.

The BiSciCol Triplifier: bringing biodiversity data to the Semantic Web

Robert P. Guralnick, John Deck, Brian J. Stucky, 2014, BMC Bioinformatics.

Integrating and Managing Biodiversity Data with the Biocollections Ontology

John Wieczorek, Robert P. Guralnick, Pier Luigi Buttigieg, 2018, Application of Semantic Technology in Biodiversity Science.

RCN4GSC Meeting Report: Initiating a Testbed for Managing Data at the Interface of Biodiversity and Genomics/Metagenomics, May 2011

Renzo Kottmann, John Wieczorek, Stan Blum, 2012, Standards in genomic sciences.

Meeting Report: Hackathon-Workshop on Darwin Core and MIxS Standards Alignment (February 2012)

Renzo Kottmann, Pelin Yilmaz, Hiroshi Mori, 2012, Standards in genomic sciences.

Simulating social-ecological systems: the Island Digital Ecosystem Avatars (IDEA) consortium

David Gavaghan, Daniel M Tartakovsky, Benoit Stoll, 2016, GigaScience.

A call for an international network of genomic observatories (GOs)

Philippe Rocca-Serra, Dawn Field, Linda Amaral-Zettler, 2012, GigaScience.

Planning for Field Based Biological Sample Collection: Using the Genomic Observatories Metadatabase Project Interface

Neil Davies, John Deck, Cynthia Riginos, 2018 .

The Global Genome Biodiversity Network (GGBN) Data Standard specification

Xin Zhou, Yong Zhang, Renzo Kottmann, 2016, Database J. Biol. Databases Curation.

An Update on the Plant Phenology Ontology and Plant Phenology Data Integration

Robert P. Guralnick, Ramona L. Walls, John Deck, 2017 .

Genomic Observatories Network: socio-technical perspectives on the path to long-term multi-omic observation

Neil M Davies, Pier Luigi Buttigieg, William H. Wilson, 2018 .

Semantics in Support of Biodiversity: An Introduction to the Biological Collections Ontology and Related Ontologies

Barry Smith, Shawn Bowers, Steve Baskauf, 2014 .

Creature Features: A semantic toolkit for biodiversity trait data

John Wieczorek, Raphael LaFrance, Ramona L. Walls, 2016 .

Field information management systems for DNA barcoding.

Rebecca Shapley, Christopher Meyer, Neil Davies, 2012, Methods in molecular biology.

Meeting report: advancing practical applications of biodiversity ontologies

Jie Zheng, David Osumi-Sutherland, John Wieczorek, 2014, Standards in Genomic Sciences.

The Genomic Observatories Metadatabase

John Deck, Cynthia Riginos, Neil Davies, 2017 .

The Genomic Observatories Metadatabase (GeOMe): A new repository for field and sampling event metadata associated with genetic samples

John Deck, Cynthia Riginos, Christopher Meyer, 2017, PLoS biology.

A High-throughput Data Ingest Pipeline for Semantic Data-stores

Robert P. Guralnick, Henry W. Loescher, Ramona L. Walls, 2017 .

Meeting Report: GBIF hackathon-workshop on Darwin Core and sample data (22-24 May 2013)

Pelin Yilmaz, John Wieczorek, Stan Blum, 2014, Standards in Genomic Sciences.

Meeting report: Identifying practical applications of ontologies for biodiversity informatics

John Wieczorek, Ramona Walls, John Deck, 2015, Standards in Genomic Sciences.

Community Next Steps for Making Globally Unique Identifiers Work for Biocollections Data

John Kunze, Gregor Hagedorn, John Wieczorek, 2015, ZooKeys.

Lessons learned from adapting the Darwin Core vocabulary standard for use in RDF

John Wieczorek, Steven J. Baskauf, Campbell O. Webb, 2016, Semantic Web.

Clarifying Concepts and Terms in Biodiversity Informatics

Reed Beaman, John Wieczorek, Gabriele Dröge, 2013, Standards in genomic sciences.

Semantics in Support of Biodiversity Knowledge Discovery: An Introduction to the Biological Collections Ontology and Related Ontologies

Barry Smith, Shawn Bowers, John Wieczorek, 2014, PloS one.

The Trouble with Triplets in Biodiversity Informatics: A Data-Driven Case against Current Identifier Practices

John Deck, Brian J. Stucky, Tom Conlin, 2014, PloS one.

Integrating herbarium specimen observations into global phenology data systems

Laura Brenskelle, Ramona Walls, John Deck, 2019, Applications in plant sciences.

The Plant Phenology Ontology: A New Informatics Resource for Large-Scale Integration of Plant Phenology Data

Ramona Walls, John Deck, Brian J. Stucky, 2018, Front. Plant Sci..

Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data

Chris Morris, John Kunze, Michel Dumontier, 2017, bioRxiv.