Yonghui Wu

发表

Building a Large Clinical Abbreviation Sense Inventory from Discharge Summaries

Hua Xu, Randolph A. Miller, Yonghui Wu, 2013, AMIA.

Combinatorial Pooling Enables Selective Sequencing of the Barley Gene Space

Gianfranco Ciardo, Marco Beccuti, Stefano Lonardi, 2013, PLoS Comput. Biol..

Minimum Word Error Rate Training for Attention-Based Sequence-to-Sequence Models

Tara N. Sainath, Patrick Nguyen, Yonghui Wu, 2017, 2018 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP).

A study of deep learning methods for de-identification of clinical notes in cross-institute settings

Xi Yang, Yonghui Wu, Jiang Bian, 2019, BMC Medical Informatics and Decision Making.

Massively Multilingual Neural Machine Translation in the Wild: Findings and Challenges pdf

Ankur Bapna, Yuan Cao, Yonghui Wu, 2019, ArXiv.

Selection of statistical features based on mutual information for classification of human coding and non-coding DNA sequences

Hong Yan, Alan Wee-Chung Liew, Yonghui Wu, 2004, Proceedings of the 17th International Conference on Pattern Recognition, 2004. ICPR 2004..

Barcoding-free BAC Pooling Enables Combinatorial Selective Sequencing of the Barley Gene Space pdf

Gianfranco Ciardo, Marco Beccuti, Stefano Lonardi, 2011, ArXiv.

A new clustering method for detecting rare senses of abbreviations in clinical notes

Carol Friedman, Hua Xu, Peter D. Stetson, 2012, J. Biomed. Informatics.

Detecting Medications and Adverse Drug Events in Clinical Notes Using Recurrent Neural Networks

Xi Yang, Yonghui Wu, Jiang Bian, 2018, Medication and Adverse Drug Event Detection.

Detecting Contradictory and Consistent Citations in Biomedical Literature

Yaoyun Zhang, Jun Xu, Hua Xu, 2017, AMIA.

Chemical named entity recognition in patents by domain knowledge and unsupervised feature learning

Hui Chen, Yaoyun Zhang, Jun Xu, 2016, Database J. Biol. Databases Curation.

MedEx-UIMA - An Open-Source System for Medication Information Extraction from Clinical Text

Hua Xu, Yonghui Wu, Joshua C. Denny, 2012, AMIA.

A Comparison of Techniques for Language Model Integration in Encoder-Decoder Speech Recognition

Tara N. Sainath, Yonghui Wu, Karen Livescu, 2018, 2018 IEEE Spoken Language Technology Workshop (SLT).

Compression of End-to-End Models

Tara N. Sainath, Yonghui Wu, Rohit Prabhavalkar, 2018, INTERSPEECH.

Analyzing Differences between Chinese and English Clinical Text: A Cross-Institution Comparison of Discharge Summaries in Two Languages

Kai Zheng, Hua Xu, Randolph A. Miller, 2016, MedInfo.

Effective statistical features for coding and non-coding DNA sequence classification for yeast, C. elegans and human

Hong Yan, Alan Wee-Chung Liew, Mengsu Yang, 2005, Int. J. Bioinform. Res. Appl..

Topic Detection by Topic Model Induced Distance Using Biased Initiation

Xiaolong Wang, Jun Xu, Yonghui Wu, 2010, AST/UCMA/ISA/ACN.

Clinical Named Entity Recognition Using Deep Learning Models

Jun Xu, Hua Xu, Yonghui Wu, 2017, AMIA.

Disentangling Correlated Speaker and Noise for Speech Synthesis via Data Augmentation and Adversarial Factorization

James Glass, James R. Glass, Yonghui Wu, 2019, ICASSP 2019 - 2019 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP).

Detecting Body Location Modifiers of Disorders in Clinical Texts via Sequence Labeling

Yaoyun Zhang, Jun Xu, Hua Xu, 2017, AMIA.

Two-Level Microprocessor-Accelerator Partitioning

Frank Vahid, Stefano Lonardi, Yonghui Wu, 2007, 2007 Design, Automation & Test in Europe Conference & Exhibition.

A hybrid approach to automatic de-identification of psychiatric notes.

Yaoyun Zhang, Hua Xu, Yonghui Wu, 2017, Journal of biomedical informatics.

Google’s Multilingual Neural Machine Translation System: Enabling Zero-Shot Translation

Martin Wattenberg, Quoc V. Le, Yonghui Wu, 2016, TACL.

Recognizing and Encoding Discorder Concepts in Clinical Text using Machine Learning and Vector Space Model

Hua Xu, Yonghui Wu, Joshua C. Denny, 2013, CLEF.

Experiments for Linear Lists

Yonghui Wu, Jiande Wang, Jiande Wang, 2016 .

Ranking Gene-Drug Relationships in Biomedical Literature Using Latent Dirichlet Allocation

Hua Xu, W. Jim Zheng, Mei Liu, 2011, Pacific Symposium on Biocomputing.

Practice for Simple Computing

Yonghui Wu, Jiande Wang, 2016 .

CLAMP – a toolkit for efficiently building customized clinical natural language processing pipelines

Hongfang Liu, Jingqi Wang, Ergin Soysal, 2017, J. Am. Medical Informatics Assoc..

Streaming End-to-end Speech Recognition for Mobile Devices

Tara N. Sainath, Ding Zhao, Ian McGraw, 2018, ICASSP 2019 - 2019 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP).

Deciphering Signaling Pathway Networks to Understand the Molecular Mechanisms of Metformin Action

Hua Xu, Peilin Jia, Zhongming Zhao, 2015, PLoS Comput. Biol..

The prisoner's dilemma in structured scale-free networks

Shuigeng Zhou, Yonghui Wu, Xing Li, 2009, Journal of Physics A: Mathematical and Theoretical.

Tacotron: Towards End-to-End Speech Synthesis

Samy Bengio, Quoc V. Le, Navdeep Jaitly, 2017, INTERSPEECH.

Clinical Acronym/Abbreviation Normalization using a Hybrid Approach

Hua Xu, Yonghui Wu, Joshua C. Denny, 2013, CLEF.

Recognizing Disjoint Clinical Concepts in Clinical Text Using Machine Learning-based Methods

Xiaolong Wang, Yaoyun Zhang, Jingqi Wang, 2015, AMIA.

Detecting Adverse Drug Reactions Using Inpatient Medication Orders and Laboratory Tests Data

Hua Xu, Randolph A. Miller, Mei Liu, 2012, 2012 IEEE Second International Conference on Healthcare Informatics, Imaging and Systems Biology.

Recognizing clinical entities in hospital discharge summaries using Structural Support Vector Machines with word representation features

Hua Xu, Yonghui Wu, Min Jiang, 2013, BMC Medical Informatics and Decision Making.

Accurate Construction of Consensus Genetic Maps via Integer Linear Programming

Stefano Lonardi, Yonghui Wu, Timothy J. Close, 2011, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

A comparison of conditional random fields and structured support vector machines for chemical entity recognition in biomedical literature

Xiaolong Wang, Yaoyun Zhang, Jingqi Wang, 2015, Journal of Cheminformatics.

STRank: A SiteRank algorithm using semantic relevance and time frequency

Zhiyong Wang, Xiaolong Wang, Yonghui Wu, 2009, 2009 IEEE International Conference on Systems, Man and Cybernetics.

Improving the Performance of Online Neural Transducer Models

Tara N. Sainath, Patrick Nguyen, Yonghui Wu, 2017, 2018 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP).

Region-Based Classification of Polarimetric SAR Images Using Wishart MRF

Yi Su, Wenxian Yu, Kefeng Ji, 2008, IEEE Geoscience and Remote Sensing Letters.

Clinical entity recognition using structural support vector machines with rich features

Hua Xu, Yonghui Wu, Buzhou Tang, 2012, DTMBIO '12.

A study of generalizability of recurrent neural network-based predictive models for heart failure onset risk using a large and heterogeneous EHR data set

Fei Wang, Xin Geng, Hua Xu, 2018, J. Biomed. Informatics.

Lingvo: a Modular and Scalable Framework for Sequence-to-Sequence Modeling pdf

Tara N. Sainath, Ankur Bapna, Navdeep Jaitly, 2019, ArXiv.

A Study of Neural Word Embeddings for Named Entity Recognition in Clinical Text

Yaoyun Zhang, Jun Xu, Hua Xu, 2015, AMIA.

An Empirical Study for Impacts of Measurement Errors on EHR based Association Studies

Jing Huang, Rui Duan, Yong Chen, 2016, AMIA.

Applying a deep learning-based sequence labeling approach to detect attributes of medical concepts in clinical text

Yang Xiang, Zhiheng Li, Yaoyun Zhang, 2019, BMC Medical Informatics and Decision Making.

No Need for a Lexicon? Evaluating the Value of the Pronunciation Lexica in End-to-End Models

Tara N. Sainath, Shankar Kumar, Patrick Nguyen, 2017, 2018 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP).

Detecting abbreviations in discharge summaries using machine learning methods.

Hua Xu, Yonghui Wu, Joshua C Denny, 2011, AMIA ... Annual Symposium proceedings. AMIA Symposium.

A hybrid system for temporal information extraction from clinical text

Hua Xu, Yonghui Wu, Joshua C. Denny, 2013, J. Am. Medical Informatics Assoc..

A comparative study of different methods for automatic identification of clopidogrel-induced bleedings in electronic health records

Hua Xu, Yonghui Wu, Joshua C. Denny, 2017, CRI.

Citation Sentiment Analysis in Clinical Trial Papers

Yaoyun Zhang, Jun Xu, Jingqi Wang, 2015, AMIA.

What Can Neural Networks Learn from Unlabeled Clinical Narratives?

Yaoyun Zhang, Jun Xu, Hua Xu, 2016, AMIA.

Identification of important factors in an inpatient fall risk prediction model to improve the quality of care using EHR and electronic administrative data: A machine-learning approach

Yonghui Wu, Mattia Prosperi, Zhaoyi Chen, 2020, Int. J. Medical Informatics.

Google's Neural Machine Translation System: Bridging the Gap between Human and Machine Translation pdf

George Kurian, Wei Wang, Quoc V. Le, 2016, ArXiv.

Development of a Unified Computable Problem-Medication Knowledge base

Adam Wright, Hua Xu, Yonghui Wu, 2014, AMIA.

Named Entity Recognition in Chinese Clinical Text Using Deep Neural Network

Hua Xu, Yonghui Wu, Min Jiang, 2015, MedInfo.

CLAMP - A User-Centric Clinical Natural Language Processing Toolkit

Jingqi Wang, Ergin Soysal, Hua Xu, 2017, AMIA.

A prototype application for real-time recognition and disambiguation of clinical abbreviations

Min Song, Hua Xu, Randolph A. Miller, 2013, DTMBIO '13.

Clinical Language Annotation, Modeling, and Processing Toolkit (CLAMP) - a user-centric NLP system

Jingqi Wang, Ergin Soysal, Hua Xu, 2015, AMIA.

Clock-Frequency Assignment for Multiple Clock Domain Systems-on-a-Chip

Frank Vahid, Stefano Lonardi, Yonghui Wu, 2007, 2007 Design, Automation & Test in Europe Conference & Exhibition.

Linear Lists Accessed Directly

Yonghui Wu, Jiande Wang, 2016 .

State-of-the-Art Speech Recognition with Sequence-to-Sequence Models

Tara N. Sainath, Navdeep Jaitly, Yonghui Wu, 2017, 2018 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP).

Domain Adaptation for Semantic Role Labeling of Clinical Text

Yaoyun Zhang, Jingqi Wang, Hua Xu, 2015, AMIA.

Complicated Engineering Issues about Electrospraying - A Vivid Lesson for Engineering Education in Higher School

Yonghui Wu, Dengguang Yu, Huiqi Sun, 2017 .

Measurement of Semantic Textual Similarity in Clinical Texts: Comparison of Transformer-Based Models

Yonghui Wu, Jiang Bian, Hansi Zhang, 2020, JMIR medical informatics.

On-line Hot Topic Recommendation Using Tolerance Rough Set Based Topic Clustering

Xiaolong Wang, Jun Xu, Yonghui Wu, 2010, J. Comput..

A comparative study of current clinical natural language processing systems on handling abbreviations in discharge summaries

Hua Xu, Randolph A. Miller, Yonghui Wu, 2012, AMIA.

Extracting genetic alteration information for personalized cancer therapy from ClinicalTrials.gov

Yaoyun Zhang, Hua Xu, Trevor Cohen, 2016, J. Am. Medical Informatics Assoc..

Algorithms of Best Paths

Yonghui Wu, Jiande Wang, 2016 .

Comparing Cancer Information Needs for Consumers in the US and China

Yaoyun Zhang, Jun Xu, Hua Xu, 2017, MedInfo.

Natural TTS Synthesis by Conditioning Wavenet on MEL Spectrogram Predictions

Navdeep Jaitly, Yuxuan Wang, Yonghui Wu, 2017, 2018 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP).

Sequence-to-Sequence Models Can Directly Transcribe Foreign Speech pdf

Navdeep Jaitly, Yonghui Wu, Zhifeng Chen, 2017, ArXiv.

Topic based automatic news recommendation using topic model and affinity propagation

Xiaolong Wang, Jun Xu, Yonghui Wu, 2010, 2010 International Conference on Machine Learning and Cybernetics.

Computable Eligibility Criteria through Ontology-driven Data Access: A Case Study of Hepatitis C Virus Trials

Yi Guo, Yonghui Wu, Xing He, 2018, AMIA.

UTHealth at SemEval-2016 Task 12: an End-to-End System for Temporal Information Extraction from Clinical Notes

Yaoyun Zhang, Jun Xu, Jingqi Wang, 2016, *SEMEVAL.

Exploring the Limits of Language Modeling pdf

Yonghui Wu, Oriol Vinyals, Noam Shazeer, 2016, ArXiv.

Implementation and Proof for Normalization Design of Object-Oriented Data Schemes

Aoying Zhou, Yonghui Wu, Wenyun Ji, 2000, TOOLS.

Detect Attributes of Medical Concepts via Sequence Labeling

Yang Xiang, Zhiheng Li, Yaoyun Zhang, 2019, 2019 IEEE International Conference on Healthcare Informatics (ICHI).

From Mechanical Comminution to Coaxial Electrospraying: Innovation Education to the Graduate Students

Yan Li, Meijuan Liu, Yonghui Wu, 2017 .

PIE: A prior knowledge guided integrated likelihood estimation method for bias reduction in association studies using electronic health records data

Jing Huang, Rui Duan, Yong Chen, 2017, J. Am. Medical Informatics Assoc..

Extraction of BI-RADS findings from breast ultrasound reports in Chinese using deep learning approaches

Xin Zhang, Li Wang, Yaoyun Zhang, 2018, Int. J. Medical Informatics.

UTH_CCB: A report for SemEval 2014 – Task 7 Analysis of Clinical Text

Yaoyun Zhang, Jingqi Wang, Hua Xu, 2014, *SEMEVAL.

Time-sensitive clinical concept embeddings learned from large electronic health records

Yang Xiang, Cui Tao, Zhiheng Li, 2019, BMC Medical Informatics and Decision Making.

A long journey to short abbreviations: developing an open-source framework for clinical abbreviation recognition and disambiguation (CARD)

Jun Xu, Ergin Soysal, Hua Xu, 2017, J. Am. Medical Informatics Assoc..

Learning to Speak Fluently in a Foreign Language: Multilingual Speech Synthesis and Cross-Language Voice Cloning

Heiga Zen, Bhuvana Ramabhadran, Yonghui Wu, 2019, INTERSPEECH.

CaLcs: Continuously Approximating Longest Common Subsequence for Sequence Level Optimization

Patrick Nguyen, Yonghui Wu, Chung-Cheng Chiu, 2018, EMNLP.

Training Deeper Neural Machine Translation Models with Transparent Attention pdf

Ankur Bapna, Yuan Cao, Yonghui Wu, 2018, EMNLP.

Sequence-to-Sequence Models Can Directly Translate Foreign Speech

Navdeep Jaitly, Yonghui Wu, Zhifeng Chen, 2017, INTERSPEECH.

LibriTTS: A Corpus Derived from LibriSpeech for Text-to-Speech

Heiga Zen, Yu Zhang, Yonghui Wu, 2019, INTERSPEECH.

Event-Triggered Consensus of General Linear Multi-agent System with Time Delay

Nankun Mu, Yonghui Wu, 2018, ISNN.

Sort of Linear Lists

Yonghui Wu, Jiande Wang, 2016 .

A Comparison of End-to-End Models for Long-Form Speech Recognition

Tara N. Sainath, Arun Narayanan, Yonghui Wu, 2019, 2019 IEEE Automatic Speech Recognition and Understanding Workshop (ASRU).

Scattering Mechanism Extraction by a Modified Cloude-Pottier Decomposition for Dual Polarization SAR

Kefeng Ji, Yonghui Wu, 2015, Remote. Sens..

Applications of Graph Traversal

Yonghui Wu, 2016 .

Clinical Abbreviation Disambiguation Using Neural Word Embeddings

Yaoyun Zhang, Jun Xu, Hua Xu, 2015, BioNLP@IJCNLP.

An Analysis of Incorporating an External Language Model into a Sequence-to-Sequence Model

Tara N. Sainath, Patrick Nguyen, Yonghui Wu, 2017, 2018 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP).

Deconvoluting BAC-Gene Relationships Using a Physical Map

Stefano Lonardi, Yonghui Wu, Timothy J. Close, 2008, J. Bioinform. Comput. Biol..

UTH-CCB: The Participation of the SemEval 2015 Challenge – Task 14

Yaoyun Zhang, Jun Xu, Jingqi Wang, 2015, *SEMEVAL.

Assessing Mental Health Signals Among Sexual and Gender Minorities using Twitter Data

Yi Guo, Xi Yang, Yonghui Wu, 2018, 2018 IEEE International Conference on Healthcare Informatics Workshop (ICHI-W).

Genre identification of Chinese finance text using machine learning method

Xiaolong Wang, Jun Xu, Yonghui Wu, 2008, 2008 IEEE International Conference on Systems, Man and Cybernetics.

Efficient and Accurate Construction of Genetic Linkage Maps from Noisy and Missing Genotyping Data

Stefano Lonardi, Yonghui Wu, Timothy J. Close, 2007, WABI.

Error-resilient LZW data compression

Wojciech Szpankowski, Stefano Lonardi, Yonghui Wu, 2006, Data Compression Conference (DCC'06).

Assessing the practice of data quality evaluation in a national clinical data research network through a systematic scoping review in the era of real-world data

Yonghui Wu, Jiang Bian, Yi Guo, 2020, J. Am. Medical Informatics Assoc..

A Linear-Time Algorithm for Predicting Functional Annotations from PPI Networks

Stefano Lonardi, Yonghui Wu, 2008, J. Bioinform. Comput. Biol..

DTome: a web-based tool for drug-target interactome construction

Hua Xu, Zhongming Zhao, Yonghui Wu, 2012, BMC Bioinformatics.

A Study of Deep Learning Methods for De-identification of Clinical Notes at Cross Institute Settings

Xi Yang, Yonghui Wu, Jiang Bian, 2019, 2019 IEEE International Conference on Healthcare Informatics (ICHI).

Large-scale prediction of adverse drug reactions using chemical, biological, and phenotypic properties of drugs

Hua Xu, Mei Liu, Zhongming Zhao, 2012, J. Am. Medical Informatics Assoc..

Evaluating Word Embeddings from Multiple Domains for Symptom Recognition in Psychiatric Notes

Yaoyun Zhang, Hua Xu, Yonghui Wu, 2017, AMIA.

CD-REST: a system for extracting chemical-induced disease relation in literature

Yaoyun Zhang, Jun Xu, Jingqi Wang, 2016, Database J. Biol. Databases Curation.

Combine Factual Medical Knowledge and Distributed Word Representation to Improve Clinical Named Entity Recognition

Xi Yang, Yonghui Wu, Yi Guo, 2018, AMIA.

Speech recognition for medical conversations pdf

Navdeep Jaitly, Patrick Nguyen, Yonghui Wu, 2017, INTERSPEECH.

Efficient Genome-Wide TagSNP Selection Across Populations via the Linkage Disequilibrium Criterion

Tao Jiang, Stefano Lonardi, Yonghui Wu, 2010, J. Comput. Biol..

Reward Augmented Maximum Likelihood for Neural Structured Prediction

Dale Schuurmans, Samy Bengio, Navdeep Jaitly, 2016, NIPS.

Transfer Learning from Speaker Verification to Multispeaker Text-To-Speech Synthesis

Patrick Nguyen, Yonghui Wu, Zhifeng Chen, 2018, NeurIPS.

Clinical concept extraction using transformers

Yonghui Wu, Jiang Bian, Xi Yang, 2020, J. Am. Medical Informatics Assoc..

Hierarchical Generative Modeling for Controllable Speech Synthesis pdf

Heiga Zen, Yu Zhang, Yuan Cao, 2018, ICLR.

Tacotron: A Fully End-to-End Text-To-Speech Synthesis Model pdf

Samy Bengio, Quoc V. Le, Navdeep Jaitly, 2017, ArXiv.

Identifying relations of medications with adverse drug events using recurrent convolutional neural networks and gradient boosting

Xi Yang, Yonghui Wu, Jiang Bian, 2019, J. Am. Medical Informatics Assoc..