Inna Kuperstein

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Community-driven roadmap for integrated disease maps

Marek Ostaszewski, Stephan Gebel, Inna Kuperstein, 2018, Briefings Bioinform..

Computational Systems Biology Approaches in Cancer Research

Inna Kuperstein, Emmanuel Barillot, E. Barillot, 2019 .

Application of Atlas of Cancer Signalling Network in pre-clinical studies

Inna Kuperstein, Andrei Zinovyev, Emmanuel Barillot, 2017, bioRxiv.

NaviCell: a web-based environment for navigation, curation and maintenance of large molecular interaction maps

Inna Kuperstein, Emmanuel Barillot, Laurence Calzone, 2013, BMC Systems Biology.

Metabolic and signalling network maps integration: application to cross-talk studies and omics data analysis in cancer

Inna Kuperstein, Ronan M. T. Fleming, Emmanuel Barillot, 2019, BMC Bioinformatics.

A multiscale signalling network map of innate immune response in cancer reveals cell heterogeneity signatures

Inna Kuperstein, Andrei Zinovyev, Emmanuel Barillot, 2019, Nature Communications.

The Virtual Metabolic Human database: integrating human and gut microbiome metabolism with nutrition and disease

Piotr Gawron, Inna Kuperstein, Ronan M. T. Fleming, 2018, bioRxiv.

From a biological hypothesis to the construction of a mathematical model.

Inna Kuperstein, Andrei Zinovyev, Emmanuel Barillot, 2013, Methods in molecular biology.

NaviCom: A web application to create interactive molecular network portraits using multi-level omics data

Inna Kuperstein, Andrei Zinovyev, Emmanuel Barillot, 2016 .

Knowledge Formalization and High-Throughput Data Visualization Using Signaling Network Maps

Inna Kuperstein, Andrei Zinovyev, Emmanuel Barillot, 2016, bioRxiv.

Metabolic and signalling network map integration: application to cross-talk studies and omics data analysis in cancer

Inna Kuperstein, Andrei Zinovyev, Ronan M. T. Fleming, 2018 .

NaviCom: a web application to create interactive molecular network portraits using multi-level omics data

Inna Kuperstein, Emmanuel Barillot, Mathurin Dorel, 2016, bioRxiv.

Synthetic Lethality between Gene Defects Affecting a Single Non-essential Molecular Pathway with Reversible Steps

Inna Kuperstein, Emmanuel Barillot, Andrei Yu. Zinovyev, 2013, PLoS Comput. Biol..

Signalling maps in cancer research: construction and data analysis

Inna Kuperstein, Emmanuel Barillot, Andrei Yu. Zinovyev, 2018, Database J. Biol. Databases Curation.

Comprehensive Map of the Regulated Cell Death Signaling Network: A Powerful Analytical Tool for Studying Diseases

Inna Kuperstein, Andrei Zinovyev, Emmanuel Barillot, 2020, Cancers.

NaviCell Web Service for network-based data visualization

Inna Kuperstein, Emmanuel Barillot, Eric Bonnet, 2015, Nucleic Acids Res..

Systems medicine disease maps: community-driven comprehensive representation of disease mechanisms

Feng He, Piotr Gawron, Stephan Gebel, 2018, npj Systems Biology and Applications.

COVID-19 Disease Map, a computational knowledge repository of SARS-CoV-2 virus-host interaction mechanisms

Hiroaki Kitano, Xiaoming Hu, Marina Esteban-Medina, 2020, bioRxiv.

Signalling maps in cancer research: construction and data analysis

Inna Kuperstein, Andrei Zinovyev, Emmanuel Barillot, 2018 .

Application of Atlas of Cancer Signalling Network in preclinical studies

Inna Kuperstein, Emmanuel Barillot, Andrei Yu. Zinovyev, 2019, Briefings Bioinform..

Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v.3.0

Anne Richelle, Iñigo Apaolaza, Lin Wang, 2019, Nature Protocols.

Concomitant Notch activation and p53 deletion trigger epithelial-to-mesenchymal transition and metastasis in mouse gut

Inna Kuperstein, Emmanuel Barillot, Loredana Martignetti, 2014, Nature Communications.

Network biology elucidates metastatic colon cancer mechanisms

Inna Kuperstein, Andrei Zinovyev, A. Zinovyev, 2015, Cell cycle.

Neurotoxicity of Alzheimer's disease Aβ peptides is induced by small changes in the Aβ42 to Aβ40 ratio

Inna Kuperstein, Joost Schymkowitz, Frederic Rousseau, 2010, The EMBO journal.

Drug-Driven Synthetic Lethality: Bypassing Tumor Cell Genetics with a Combination of AsiDNA and PARP Inhibitors

Inna Kuperstein, Andrei Zinovyev, Emmanuel Barillot, 2016, Clinical Cancer Research.

Fibroblast Heterogeneity and Immunosuppressive Environment in Human Breast Cancer.

Inna Kuperstein, Andrei Zinovyev, Anne Vincent-Salomon, 2018, Cancer cell.

COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms

Hiroaki Kitano, Egon L. Willighagen, Olaf Wolkenhauer, 2020, Scientific Data.

Network-based approaches for drug response prediction and targeted therapy development in cancer.

Inna Kuperstein, Andrei Zinovyev, Emmanuel Barillot, 2015, Biochemical and biophysical research communications.