David J. Evans

发表

A Hepatitis C Virus cis-Acting Replication Element Forms a Long-Range RNA-RNA Interaction with Upstream RNA Sequences in NS5B

A. Tuplin, P. Simmonds, R. Elliott, 2008, Journal of Virology.

MosaicSolver: a tool for determining recombinants of viral genomes from pileup data

Eugene V. Ryabov, N. Burroughs, Jonathan D. Moore, 2014, Nucleic acids research.

Structural and Functional Insights into the Interaction of Echoviruses and Decay-accelerating Factor*

David T. Williams, Susan M. Lea, David Bhella, 2006, Journal of Biological Chemistry.

Echoviruses Bind Heparan Sulfate at the Cell Surface

I. Goodfellow, R. Powell, David J. Evans, 2001, Journal of Virology.

An engineered poliovirus chimaera elicits broadly reactive HIV-1 neutralizing antibodies

R. Weiss, J. Meredith, J. McKeating, 1989, Nature.

Mapping CD55 Function

O. Spiller, P. Williams, S. Lea, 2003, The Journal of Biological Chemistry.

Evolutionarily related Sacbrood virus and Deformed wing virus evoke different transcriptional responses in the honeybee which may facilitate horizontal or vertical transmission of these viruses

Jonathan D. Moore, E. Ryabov, Graham R. Wood, 2015 .

Role for β2-Microglobulin in Echovirus Infection of Rhabdomyosarcoma Cells

J. Almond, P. Pipkin, R. Powell, 1998, Journal of Virology.

Fatty Acid-Depleted Albumin Induces the Formation of Echovirus A Particles

J. Meredith, J. Almond, Y. Chaudhry, 2000, Journal of Virology.

Generation of Anti-complement “Prodrugs”

B. Morgan, I. Goodfellow, B. Caterson, 2003, Journal of Biological Chemistry.

Inhibition of Coxsackie B Virus Infection by Soluble Forms of Its Receptors: Binding Affinities, Altered Particle Formation, and Competition with Cellular Receptors

A. Blom, O. Spiller, D. Kerrigan, 2005, Journal of Virology.

Deformed Wing Virus spillover from honey bees to bumble bees: a reverse genetic study

Katharin Balbirnie-Cumming, Luke Woodford, O. N. Gusachenko, 2019, bioRxiv.

The poliovirus 2C cis-acting replication element-mediated uridylylation of VPg is not required for synthesis of negative-sense genomes.

R. Andino, C. Polacek, I. Goodfellow, 2003, The Journal of general virology.

First come, first served: superinfection exclusion in Deformed wing virus is dependent upon sequence identity and not the order of virus acquisition

Katharin Balbirnie-Cumming, Luke Woodford, O. N. Gusachenko, 2021, The ISME Journal.

Green Bees: Reverse Genetic Analysis of Deformed Wing Virus Transmission, Replication, and Tropism

Katharin Balbirnie-Cumming, E. Campbell, A. Bowman, 2020, Viruses.

Identification of a cis-Acting Replication Element within the Poliovirus Coding Region

J. Meredith, W. Barclay, Dave J Evans, 2000, Journal of Virology.

Edinburgh Research Explorer Detection of genome-scale ordered RNA structure (GORS) in genomes of positive-stranded RNA viruses

A. Tuplin, P. Simmonds, David J. Evans, 2022 .

Influence of genome-scale RNA structure disruption on the replication of murine norovirus—similar replication kinetics in cell culture but attenuation of viral fitness in vivo

P. Simmonds, A. Arias, D. Bailey, 2013, Nucleic acids research.

Quantitative and Qualitative Changes in the Deformed Wing Virus Population in Honey Bees Associated with the Introduction or Removal of Varroa destructor

G. Budge, E. Campbell, A. Bowman, 2022, Viruses.

Possible Involvement oftheDivision CycleinDispersal of Escherichia coli fromBiofilms

D. Allison, M. R. Brown, P. Gilbert, 1990 .

A Virulent Strain of Deformed Wing Virus (DWV) of Honeybees (Apis mellifera) Prevails after Varroa destructor-Mediated, or In Vitro, Transmission

N. Burroughs, Jonathan D. Moore, A. Mead, 2014, PLoS pathogens.

Detection of genome-scale ordered RNA structure (GORS) in genomes of positive-stranded RNA viruses: Implications for virus evolution and host persistence.

A. Tuplin, P. Simmonds, Dave J Evans, 2004, RNA.

Role of riboflavin in beer flavor instability: determination of levels of riboflavin and its origin in beer by fluorometric apoprotein titration.

Dave J Evans, C. Laane, R. Hilhorst, 2002, Journal of agricultural and food chemistry.

The Iflaviruses Sacbrood virus and Deformed wing virus evoke different transcriptional responses in the honeybee which may facilitate their horizontal or vertical transmission

Jonathan D. Moore, E. Ryabov, Graham R. Wood, 2016, PeerJ.

Deformed wing virus: using reverse genetics to tackle unanswered questions about the most important viral pathogen of honey bees.

Luke Woodford, David J. Evans, 2020, FEMS microbiology reviews.

Bioinformatic and functional analysis of RNA secondary structure elements among different genera of human and animal caliciviruses

P. Simmonds, D. Bailey, Dave J Evans, 2008, Nucleic acids research.

Coxsackievirus B3-Associated Myocardial Pathology and Viral Load Reduced by Recombinant Soluble Human Decay-Accelerating Factor in Mice

B. McManus, Honglin Luo, O. Spiller, 2003, Laboratory Investigation.

Identification of a Conserved RNA Replication Element (cre) within the 3Dpol-Coding Sequence of Hepatoviruses

P. Simmonds, S. Lemon, M. Yi, 2008, Journal of Virology.

Error correction and diversity analysis of population mixtures determined by NGS

Graham R. Wood, Nigel J. Burroughs, David J. Evans, 2014, PeerJ.

Structure and function analysis of the poliovirus cis-acting replication element (CRE).

D. Kerrigan, Dave J Evans, I. Goodfellow, 2003, RNA.

Thermodynamic and phylogenetic prediction of RNA secondary structures in the coding region of hepatitis C virus.

A. Tuplin, P. Simmonds, J. Wood, 2002, RNA.

Structural and functional analysis of the roles of the HCV 5′ NCR miR122-dependent long-range association and SLVI in genome translation and replication

A. Tuplin, J. Cook, David J. Evans, 2018, PeerJ.

The influence of viral RNA secondary structure on interactions with innate host cell defences

P. Simmonds, J. Witteveldt, David J. Evans, 2013, Nucleic acids research.

Shedding new light on viral photosynthesis

D. Scanlan, A. Millard, David J. Evans, 2015, Photosynthesis Research.

Viruses Inhibit CO2 Fixation in the Most Abundant Phototrophs on Earth

D. Scanlan, A. Millard, David J. Evans, 2016, Current Biology.

Explorer Thermodynamic and phylogenetic prediction of RNA secondary structures in the coding region of hepatitis C virus

A. Tuplin, P. Simmonds, J. Wood, 2017 .

An antisense RNA in a lytic cyanophage links psbA to a gene encoding a homing endonuclease

D. Scanlan, Gregor Gierga, W. Hess, 2010, The ISME Journal.

Bioinformatic and Physical Characterizations of Genome-Scale Ordered RNA Structure in Mammalian RNA Viruses

P. Simmonds, Matthew D Davis, S. Sagan, 2008, Journal of Virology.

Chronic bee paralysis as a serious emerging threat to honey bees

G. Budge, S. Rushton, M. Shirley, 2020, Nature Communications.

Generated Randomly and Selected Functionally? The Nature of Enterovirus Recombination

Fadi G. Alnaji, J. Moore, Dave J Evans, 2022, bioRxiv.

Mechanisms and consequences of positive-strand RNA virus recombination.

David J. Evans, K. Bentley, 2018, The Journal of general virology.

Inhibition of HCV translation by disrupting the structure and interactions of the viral CRE and 3′ X-tail

A. Tuplin, J. Cook, David J. Evans, 2015, Nucleic acids research.

Recombination in Enteroviruses Is a Biphasic Replicative Process Involving the Generation of Greater-than Genome Length ‘Imprecise’ Intermediates

J. Cook, Kym Lowry, David J. Evans, 2014, PLoS pathogens.

The influence of CpG and UpA dinucleotide frequencies on RNA virus replication and characterization of the innate cellular pathways underlying virus attenuation and enhanced replication

P. Simmonds, J. Witteveldt, David J. Evans, 2014, Nucleic acids research.

A twist in the tail: SHAPE mapping of long-range interactions and structural rearrangements of RNA elements involved in HCV replication

A. Tuplin, P. Simmonds, David J. Evans, 2012, Nucleic acids research.

A Hepatitis C Virus cis-Acting Replication Element Forms a Long-Range RNA-RNA Interaction with Upstream RNA Sequences in NS 5 B †

A. Tuplin, P. Simmonds, R. Elliott, 2008 .

CpG and UpA dinucleotides in both coding and non-coding regions of echovirus 7 inhibit replication initiation post-entry

P. Simmonds, Isabelle Dietrich, T. Passchier, 2017, eLife.

RNA virus attenuation by codon pair deoptimisation is an artefact of increases in CpG/UpA dinucleotide frequencies

P. Simmonds, M. Ryan, Fiona Tulloch, 2014, eLife.

Biochemical and genetic analysis of the role of the viral polymerase in enterovirus recombination

J. Arnold, C. Cameron, David J. Evans, 2016, Nucleic acids research.

Coxsackie B viruses that use human DAF as a receptor infect pig cells via pig CAR and do not use pig DAF.

O. Spiller, B. Morgan, I. Goodfellow, 2002, The Journal of general virology.

Recombinants between Deformed wing virus and Varroa destructor virus-1 may prevail in Varroa destructor-infested honeybee colonies.

Aleksey Jironkin, N. Burroughs, Jonathan D. Moore, 2011, The Journal of general virology.

Spontaneous Deletion of an “ORFanage” Region Facilitates Host Adaptation in a “Photosynthetic” Cyanophage

D. Scanlan, A. Millard, Branko Rihtman, 2015, PloS one.

Attenuation of dengue (and other RNA viruses) with codon pair recoding can be explained by increased CpG/UpA dinucleotide frequencies

P. Simmonds, M. Ryan, Fiona Tulloch, 2015, Proceedings of the National Academy of Sciences.

Evidence for and against deformed wing virus spillover from honey bees to bumble bees: a reverse genetic analysis

Katharin Balbirnie-Cumming, Luke Woodford, E. Ryabov, 2020, Scientific Reports.

The Structure of Echovirus Type 12 Bound to a Two-domain Fragment of Its Cellular Attachment Protein Decay-accelerating Factor (CD 55)*

P. Roversi, D. Bhella, S. Lea, 2004, Journal of Biological Chemistry.

Interaction between Echovirus 7 and Its Receptor, Decay-Accelerating Factor (CD55): Evidence for a Secondary Cellular Factor in A-Particle Formation

J. Almond, R. Powell, David J. Evans, 1998, Journal of Virology.

Genetic and Physical Characterisation of nif and ntr Genes in Azotobacter chroococcum and A. vinelandii

J. Ramos, J. Postgate, D. Dean, 1985 .

The Genetic Analysis of Nitrogen Fixation, Oxygen Tolerance and Hydrogen Uptake in Azotobacters [and Discussion]

J. Ramos, M. Buck, E. Santero, 1987 .

Modelling of poliovirus

J. Almond, M. Crabbe, M.James C. Crabbe, 1990, FEBS letters.

Hepatitis B core antigen virus-like particles : characterization and investigation 1 of their stability in simulated and pig gastro-intestinal fluids 2 3

G. Lomonossoff, A. Berardi, S. Barker, 2018 .

Plant-expressed Hepatitis B core antigen virus-like particles: Characterization and investigation of their stability in simulated and pig gastro-intestinal fluids.

G. Lomonossoff, A. Berardi, S. Barker, 2017, International journal of pharmaceutics.

Energy limitation of cyanophage development: implications for marine carbon cycling

D. Scanlan, A. Millard, David J. Evans, 2018, The ISME Journal.

Interactions of decay-accelerating factor (DAF) with haemagglutinating human enteroviruses: utilizing variation in primate DAF to map virus binding sites.

S. Lea, Y. Chaudhry, I. Goodfellow, 2004, The Journal of general virology.

Determination of the Affinity and Kinetic Constants for the Interaction between the Human Virus Echovirus 11 and Its Cellular Receptor, CD55*

D. Stuart, P. A. van der Merwe, S. Lea, 1998, The Journal of Biological Chemistry.

J. Meredith, J. Almond, J. Rohll, 1999, Journal of Virology.

CpG and UpA dinucleotides in both coding and non-coding regions of echovirus 7 inhibit replication initiation post-entry

P. Simmonds, Isabelle Dietrich, T. Passchier, 2017, eLife.

Is Independent of fleQ and Correlates with Bistability of Type Three System Expression.

T. Yahr, David J. Evans, A. R. Kroken, 2018 .

The 3' untranslated region of picornavirus RNA: features required for efficient genome replication

D. H. Moon, J. Almond, J. Rohll, 1995, Journal of virology.

Shedding new light on viral photosynthesis

D. Scanlan, Dave J Evans, A. Millard, 2014, Photosynthesis Research.