Delphine Ropers

发表

Modeling and formal verification of biological regulatory networks: An integrative approach

Radu Mateescu, Pedro T. Monteiro, Ana T. Freitas, 2010, 2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW).

An ensemble of mathematical models showing diauxic growth behaviour

Andreas Kremling, Hidde de Jong, Johannes Geiselmann, 2018, BMC Syst. Biol..

Strategies for dealing with incomplete information in the modeling of molecular interaction networks

Hidde de Jong, Delphine Ropers, H. D. Jong, 2006, Briefings Bioinform..

Research Program - Analysis of integrated metabolic and gene regulatory networks

Eugenio Cinquemani, Valentin Zulkower, Hidde de Jong, 2013 .

The Carbon Assimilation Network in Escherichia coli Is Densely Connected and Largely Sign-Determined by Directions of Metabolic Fluxes

Hidde de Jong, Daniel Kahn, Valentina Baldazzi, 2010, PLoS Comput. Biol..

Genetic network analyzer: a tool for the qualitative modeling and simulation of bacterial regulatory networks.

François Rechenmann, Pedro T. Monteiro, Johannes Geiselmann, 2012, Methods in molecular biology.

Temporal logic patterns for querying dynamic models of cellular interaction networks

Radu Mateescu, Hidde de Jong, Pedro T. Monteiro, 2008, ECCB.

Principal process analysis of biological models

Jean-Luc Gouzé, Stefano Casagranda, Delphine Ropers, 2018, BMC Syst. Biol..

Model simplification and process analysis of biological models

Jean-Luc Gouzé, Stefano Casagranda, Delphine Ropers, 2016 .

Experimental and computational validation of models of fluorescent and luminescent reporter genes in bacteria

Hidde de Jong, Corinne Pinel, Johannes Geiselmann, 2010, BMC Systems Biology.

Software - Genetic Network Analyzer (GNA)

Hidde de Jong, François Rechenmann, Pedro T. Monteiro, 2008 .

Multiscale Modeling of Alternative Splicing Regulation

Alexander Bockmayr, Hidde de Jong, Christiane Branlant, 2003, CMSB.

Robust reconstruction of gene expression profiles from reporter gene data using linear inversion

Valentin Zulkower, Hidde de Jong, Johannes Geiselmann, 2015, Bioinform..

Data for the qualitative modeling of the osmotic stress response to NaCl in Escherichia coli

Delphine Ropers, Aline Métris, 2016, Data in brief.

Scientific Foundations - Methods: Analysis, simulation, and identification of bacterial regulatory networks

Woei-Fuh Wang, Valentin Zulkower, Hidde de Jong, 2010 .

Validation of qualitative models of genetic regulatory networks by model checking: analysis of the nutritional stress response in Escherichia coli

Radu Mateescu, Dominique Schneider, Hidde de Jong, 2005, ISMB.

Scientific Foundations - Models: Development and reduction of models of bacterial regulatory networks

Hidde de Jong, Johannes Geiselmann, Delphine Ropers, 2010 .

Estimation of time-varying growth, uptake and excretion rates from dynamic metabolomics data

Eugenio Cinquemani, Hidde de Jong, Delphine Ropers, 2017, Bioinform..

Model Reduction Using Piecewise-Linear Approximations Preserves Dynamic Properties of the Carbon Starvation Response in Escherichia coli

Hidde de Jong, Valentina Baldazzi, Delphine Ropers, 2011, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Analysis and Verification of Qualitative Models of Genetic Regulatory Networks: A Model-Checking Approach

Radu Mateescu, Dominique Schneider, Hidde de Jong, 2005, IJCAI.

Stability analysis of a reduced transcription-translation model of RNA polymerase

Jean-Luc Gouzé, Ismail Belgacem, Delphine Ropers, 2014, 53rd IEEE Conference on Decision and Control.

WellReader: a MATLAB program for the analysis of fluorescence and luminescence reporter gene data

Frédéric Boyer, Hidde de Jong, Corinne Pinel, 2010, Bioinform..

Model reduction and process analysis of biological models

Jean-Luc Gouzé, Stefano Casagranda, Delphine Ropers, 2015, 2015 23rd Mediterranean Conference on Control and Automation (MED).

Temporal Logic Patterns for Querying Qualitative Models of Genetic Regulatory Networks

Radu Mateescu, Hidde de Jong, Pedro T. Monteiro, 2008, ECAI.

A declarative constraint-based method for analyzing discrete genetic regulatory networks

Laurent Trilling, Eric Fanchon, Delphine Ropers, 2009, Biosyst..

A multi-scale constraint programming model of alternative splicing regulation

Alexander Bockmayr, Hidde de Jong, Christiane Branlant, 2004, Theor. Comput. Sci..

Qualitative Analysis and Verification of Hybrid Models of Genetic Regulatory Networks: Nutritional Stress Response in

Dominique Schneider, Hidde de Jong, Grégory Batt, 2005, HSCC.

Analyse qualitative de la dynamique de réseaux de régulation génique par des modèles linéaires par morceaux

Jean-Luc Gouzé, Dominique Schneider, Hidde de Jong, 2007, Tech. Sci. Informatiques.

A synthetic growth switch based on controlled expression of RNA polymerase

Johannes Geiselmann, Delphine Ropers, Hidde de Jong, 2015, Molecular systems biology.

Acetate Metabolism and the Inhibition of Bacterial Growth by Acetate

Stéphane Pinhal, Johannes Geiselmann, Delphine Ropers, 2019, Journal of bacteriology.

Importance of metabolic coupling for the dynamics of gene expression following a diauxic shift in Escherichia coli.

Daniel Kahn, Valentina Baldazzi, Johannes Geiselmann, 2012, Journal of theoretical biology.

Symbolic Reachability Analysis of Genetic Regulatory Networks using Qualitative Abstraction

Johannes Geiselmann, Delphine Ropers, Michel Page, 2004 .

Mathematical modelling of microbes: metabolism, gene expression and growth

Eugenio Cinquemani, Jean-Luc Gouzé, Stefano Casagranda, 2017, Journal of The Royal Society Interface.

Qualitative Simulation of the Nutritional Stress Response in Escherichia coli

Dominique Schneider, Hidde de Jong, Johannes Geiselmann, 2003 .

Resource Reallocation in Bacteria by Reengineering the Gene Expression Machinery.

Johannes Geiselmann, Delphine Ropers, Hidde de Jong, 2017, Trends in microbiology.