Kasper D Hansen

Orchestrating high-throughput genomic analysis with Bioconductor

Raphael Gottardo, Robert Gentleman, Wolfgang Huber, 2015, Nature Methods.

Testing and Validation of Computational Methods for Mass Spectrometry.

Henning Hermjakob, Oliver Kohlbacher, Laurent Gatto, 2016, Journal of proteome research.

Rail-dbGaP: analyzing dbGaP-protected data in the cloud with Amazon Elastic MapReduce

Jeffrey T Leek, Abhinav Nellore, Christopher Wilks, 2016 .

Correcting for cell-type heterogeneity in epigenome-wide association studies: revisiting previous analyses

Rafael A Irizarry, Kasper D Hansen, Stephan Beck, 2017, Nature Methods.

Reproducible RNA-seq analysis using recount2

Jeffrey T Leek, Leonardo Collado-Torres, Abhinav Nellore, 2017, Nature Biotechnology.

Differential expression analysis of RNA-seq data at single-base resolution

Jeffrey T Leek, Alyssa C. Frazee, Rafael A Irizarry, 2014, Biostatistics.

Genome-wide association study identifies peanut allergy-specific loci and evidence of epigenetic mediation in US children

Kari Christine Nadeau, Xin Xu, Terri H Beaty, 2022 .

Coverage recommendations for methylation analysis by whole genome bisulfite sequencing

Martin J. Aryee, Martin J Aryee, Alexander Meissner, 2014, Nature Methods.

Whole-genome analysis of the methylome and hydroxymethylome in normal and malignant lung and liver

Xin Li, Kasper D Hansen, A. Feinberg, 2016, bioRxiv.

Conservation of an RNA regulatory map between Drosophila and mammals.

Li Yang, Steven E Brenner, Sandrine Dudoit, 2011, Genome research.

A screen of 1,049 schizophrenia and 30 Alzheimer's‐associated variants for regulatory potential

Kasper D Hansen, Dimitrios Avramopoulos, Loyal A Goff, 2019, American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics.

Genome-wide association study identifies peanut allergy-specific loci and evidence of epigenetic mediation in US children

Kari Christine Nadeau, Xin Xu, Terri H Beaty, 2015 .

Age and sun exposure-related widespread genomic blocks of hypomethylation in nonmalignant skin

Xin Li, Rafael A Irizarry, Kasper D Hansen, 2015, Genome Biology.

Bacterial infection remodels the DNA methylation landscape of human dendritic cells

Miao Yu, Jenny Tung, Kasper D Hansen, 2015, bioRxiv.