Steven Henikoff

发表

CODEHOP (COnsensus-DEgenerate Hybrid Oligonucleotide Primer) PCR primer design

Timothy Rose, Jorja G. Henikoff, Steven Henikoff, 2003, Nucleic Acids Res..

Increased coverage of protein families with the Blocks Database servers

Shmuel Pietrokovski, Jorja G. Henikoff, Steven Henikoff, 2000, Nucleic Acids Res..

Detection of protein similarities using nucleotide sequence databases

Steven Henikoff, James C. Wallace, S. Henikoff, 1988, Nucleic Acids Res..

Recent enhancements to the Blocks Database servers

Shmuel Pietrokovski, Jorja G. Henikoff, Steven Henikoff, 1997, Nucleic Acids Res..

A protein family classification method for analysis of large DNA sequences

Jorja G. Henikoff, Steven Henikoff, S. Henikoff, 1994, 1994 Proceedings of the Twenty-Seventh Hawaii International Conference on System Sciences.

Supporting Online Material Materials and Methods Figs. S1 to S50 Tables S1 to S18 References Identification of Functional Elements and Regulatory Circuits by Drosophila Modencode

Gos Micklem, Lincoln D Stein, Daniel Marbach, 2022 .

The Blocks database--a system for protein classification

Shmuel Pietrokovski, Jorja G. Henikoff, Steven Henikoff, 1996, Nucleic Acids Res..

Superior performance in protein homology detection with the Blocks Database servers

Shmuel Pietrokovski, Jorja G. Henikoff, Steven Henikoff, 1998, Nucleic Acids Res..

PATMAT: a searching and extraction program for sequence, pattern and block queries and databases

Steven Henikoff, J. C. Wallace, S. Henikoff, 1992, Comput. Appl. Biosci..

Beyond the central dogma

Steven Henikoff, 2002, Bioinform..

Affinity Selection from Biological Libraries

Steven Henikoff, James F Smothers, Paul Carter, 2002, Science.

Blocks+: a non-redundant database of protein alignment blocks derived from multiple compilations

Shmuel Pietrokovski, Jorja G. Henikoff, Steven Henikoff, 1999, Bioinform..

PHAT: a transmembrane-specific substitution matrix

Jorja G. Henikoff, Steven Henikoff, Pauline C. Ng, 2000, Bioinform..

SIFT: predicting amino acid changes that affect protein function

Steven Henikoff, Pauline C. Ng, S. Henikoff, 2003, Nucleic Acids Res..

Using substitution probabilities to improve position-specific scoring matrices

Jorja G. Henikoff, Steven Henikoff, S. Henikoff, 1996, Comput. Appl. Biosci..

New features of the Blocks Database servers

Shmuel Pietrokovski, Jorja G. Henikoff, Steven Henikoff, 1999, Nucleic Acids Res..

Ronald H. A. Plasterk, Steven Henikoff, S. Henikoff, 1988, Nucleic Acids Res..

SIFT web server: predicting effects of amino acid substitutions on proteins

Jing Hu, Steven Henikoff, Prateek Kumar, 2012, Nucleic Acids Res..

Histone variants — ancient wrap artists of the epigenome

Steven Henikoff, Paul B. Talbert, S. Henikoff, 2010, Nature Reviews Molecular Cell Biology.

ISWI and CHD chromatin remodelers bind to promoters but act in gene bodies

Steven Henikoff, Toshio Tsukiyama, Gabriel E Zentner, 2013, Epigenetics & Chromatin.

Histone modification: cause or cog?

Steven Henikoff, Ali Shilatifard, S. Henikoff, 2011, Trends in genetics : TIG.

“Point” Centromeres of Saccharomyces Harbor Single Centromere-Specific Nucleosomes

Jorja G. Henikoff, Steven Henikoff, S. Henikoff, 2012, Genetics.

Comparative Sequence Analysis: Finding Genes

Steven Henikoff, S. Henikoff, 1994 .

Using the Blocks Database to Recognize Functional Domains

Shmuel Pietrokovski, Steven Henikoff, S. Henikoff, 2003, Current protocols in bioinformatics.

Large-scale discovery of induced point mutations with high-throughput TILLING.

Steven Henikoff, Jorja G Henikoff, Luca Comai, 2003, Genome research.

Histone H3.3 Variant Dynamics in the Germline of Caenorhabditis elegans

Steven Henikoff, James R Priess, S. Henikoff, 2006, PLoS genetics.

A unique chromatin complex occupies young α-satellite arrays of human centromeres

Jorja G. Henikoff, Steven Henikoff, S. Henikoff, 2015, Science Advances.

Peak calling by Sparse Enrichment Analysis for CUT&RUN chromatin profiling

Dan Tenenbaum, Steven Henikoff, Michael P. Meers, 2019, Epigenetics & Chromatin.

Mismatch cleavage by single-strand specific nucleases.

Steven Henikoff, Luca Comai, S. Henikoff, 2004, Nucleic acids research.

Spreading of silent chromatin: inaction at a distance

Steven Henikoff, Paul B. Talbert, S. Henikoff, 2006, Nature Reviews Genetics.

Targeted screening for induced mutations

Steven Henikoff, Elizabeth A. Greene, Luca Comai, 2000, Nature Biotechnology.

Phylogenomics of the nucleosome

Steven Henikoff, S. Henikoff, Harmit S. Malik, 2003, Nature Structural Biology.

Surveying the epigenomic landscape, one base at a time

Steven Henikoff, S. Henikoff, G. Zentner, 2012, Genome Biology.

Expansions of transgene repeats cause heterochromatin formation and gene silencing in Drosophila

Steven Henikoff, S. Henikoff, D. Dorer, 1994, Cell.

Protein Family Databases

Jorja G. Henikoff, Steven Henikoff, 2001 .

Nucleosome destabilization in the epigenetic regulation of gene expression

Steven Henikoff, S. Henikoff, 2008, Nature Reviews Genetics.

Transcribing through the nucleosome.

Steven Henikoff, Christopher M. Weber, S. Henikoff, 2014, Trends in biochemical sciences.

ChEC-seq kinetics discriminates transcription factor binding sites by DNA sequence and shape in vivo

Beibei Xin, Remo Rohs, Steven Henikoff, 2015, Nature Communications.

Maize Centromeres: Organization and Functional Adaptation in the Genetic Background of Oat

Steven Henikoff, Jiming Jiang, S. Henikoff, 2004, The Plant Cell Online.

An efficient targeted nuclease strategy for high-resolution mapping of DNA binding sites

Steven Henikoff, S. Henikoff, Peter J. Skene, 2016, bioRxiv.

Discovery of chemically induced mutations in rice by TILLING

Steven Henikoff, Luca Comai, S. Henikoff, 2007, BMC Plant Biology.

High-resolution digital profiling of the epigenome

Steven Henikoff, Gabriel E. Zentner, S. Henikoff, 2014, Nature Reviews Genetics.

Labile H3.3+H2A.Z nucleosomes mark 'nucleosome-free regions'

Steven Henikoff, S. Henikoff, 2009, Nature Genetics.

Welcome to Epigenetics & Chromatin

Steven Henikoff, Frank Grosveld, S. Henikoff, 2008, Epigenetics & Chromatin.

Histone variants on the move: substrates for chromatin dynamics

Steven Henikoff, Paul B. Talbert, S. Henikoff, 2016, Nature Reviews Molecular Cell Biology.

A simple method for generating high-resolution maps of genome-wide protein binding

Steven Henikoff, S. Henikoff, Peter J. Skene, 2015, eLife.

Inner Kinetochore Protein Interactions with Regional Centromeres of Fission Yeast

Steven Henikoff, Paul B. Talbert, S. Henikoff, 2015, Genetics.

Asymmetric nucleosomes flank promoters in the budding yeast genome

Srinivas Ramachandran, Steven Henikoff, S. Henikoff, 2015, Genome research.

High-resolution mapping of transcription factor binding sites on native chromatin

Steven Henikoff, S. Henikoff, Sivakanthan Kasinathan, 2013, Epigenetics & Chromatin.

Genome-wide analysis of DNA methylation patterns

Steven Henikoff, S. Henikoff, D. Zilberman, 2007, Development.

CUT&Tag for efficient epigenomic profiling of small samples and single cells

Jorja G. Henikoff, Steven Henikoff, Kami Ahmad, 2019 .

Capturing the dynamic epigenome

Steven Henikoff, S. Henikoff, R. Deal, 2010, Genome Biology.

Environmental responses mediated by histone variants.

Steven Henikoff, S. Henikoff, P. Talbert, 2014, Trends in cell biology.

Automated in situ chromatin profiling efficiently resolves cell types and gene regulatory programs

James M. Olson, Steven Henikoff, Kami Ahmad, 2018, Epigenetics & Chromatin.

Histone modifications: combinatorial complexity or cumulative simplicity?

Steven Henikoff, S. Henikoff, 2005, Proceedings of the National Academy of Sciences of the United States of America.

Modulation of a Transcription Factor Counteracts Heterochromatic Gene Silencing in Drosophila

Steven Henikoff, Kami Ahmad, S. Henikoff, 2001, Cell.

The nucleosomal barrier to promoter escape by RNA polymerase II is overcome by the chromatin remodeler Chd1

Steven Henikoff, Mark Groudine, S. Henikoff, 2014, eLife.

Mapping Regulatory Factors by Immunoprecipitation from Native Chromatin

Steven Henikoff, Kami Ahmad, S. Henikoff, 2015, Current protocols in molecular biology.

Quantitative epigenetics

Steven Henikoff, S. Henikoff, S. Rutherford, 2003, Nature Genetics.

Precise genome-wide mapping of single nucleosomes and linkers in vivo

Srinivas Ramachandran, Steven Henikoff, Terri D Bryson, 2018, Genome Biology.

Improved CUT&RUN chromatin profiling tools

Steven Henikoff, Jorja G Henikoff, Michael P. Meers, 2019, eLife.

Extensive Demethylation of Repetitive Elements During Seed Development Underlies Gene Imprinting

Steven Henikoff, S. Henikoff, K. Bubb, 2009, Science.

H2A.Z nucleosomes enriched over active genes are homotypic

Jorja G. Henikoff, Steven Henikoff, Christopher M. Weber, 2010, Nature Structural &Molecular Biology.

Transcriptional Regulators Compete with Nucleosomes Post-replication

Srinivas Ramachandran, Steven Henikoff, S. Henikoff, 2016, Cell.

Histone variants, nucleosome assembly and epigenetic inheritance.

Steven Henikoff, Kami Ahmad, S. Henikoff, 2004, Trends in genetics : TIG.

Epigenetic Consequences of Nucleosome Dynamics

Steven Henikoff, Kami Ahmad, S. Henikoff, 2002, Cell.

Chromatin profiling using targeted DNA adenine methyltransferase

Steven Henikoff, Bas van Steensel, S. Henikoff, 2001, Nature Genetics.

TILLING: practical single-nucleotide mutation discovery.

Steven Henikoff, Luca Comai, S. Henikoff, 2006, The Plant journal : for cell and molecular biology.

Pioneer Factor-Nucleosome Binding Events during Differentiation Are Motif Encoded.

Steven Henikoff, Michael P. Meers, Derek H Janssens, 2019, Molecular cell.