Xiaohui Xie

发表

FactorNet: a deep learning framework for predicting cell type specific transcription factor binding from nucleotide-resolution sequential data

Daniel Quang, Xiaohui Xie, Xiaohui S. Xie, 2017, bioRxiv.

Poly(A) code analyses reveal key determinants for tissue-specific mRNA alternative polyadenylation

Yi Li, Lingjie Weng, Xiaohui Xie, 2016, RNA.

Discovering and mapping chromatin states using a tree hidden Markov model

Xiaohui Xie, Yuanfeng Wang, Jacob Biesinger, 2013, BMC Bioinformatics.

Erralpha and Gabpa/b specify PGC-1alpha-dependent oxidative phosphorylation gene expression that is altered in diabetic muscle.

Xiaohui Xie, Nick Patterson, Christoph Handschin, 2004, Proceedings of the National Academy of Sciences of the United States of America.

Integrative ChIP-seq/Microarray Analysis Identifies a CTNNB1 Target Signature Enriched in Intestinal Stem Cells and Colon Cancer

Xiaohui Xie, Bogi Andersen, Xing Dai, 2014, PloS one.

Biallelic genome modification in F0 Xenopus tropicalis embryos using the CRISPR/Cas system

Xiaohui Xie, Ken W. Y. Cho, Jacob Biesinger, 2013, Genesis.

Systematic identification of human mitochondrial disease genes through integrative genomics

Sarah Calvo, Steven A Carr, Xiaohui Xie, 2006, Nature Genetics.

Genome-wide localization of SREBP-2 in hepatic chromatin predicts a role in autophagy.

Xiaohui Xie, Jacob Biesinger, Xiaohui S. Xie, 2011, Cell metabolism.

Systematic discovery of regulatory motifs in Fusarium graminearum by comparing four Fusarium genomes

Li-Jun Ma, Xiaohui Xie, Xiaohui S. Xie, 2010, BMC Genomics.

Genome-wide analysis of hepatic LRH-1 reveals a promoter binding preference and suggests a role in regulating genes of lipid metabolism in concert with FXR

Xiaohui Xie, Jacob Biesinger, Xiaohui S. Xie, 2012, BMC Genomics.

Genome-wide analysis of SREBP-1 binding in mouse liver chromatin reveals a preference for promoter proximal binding to a new motif

Xiaohui Xie, Xiaohui S. Xie, T. Osborne, 2009, Proceedings of the National Academy of Sciences.

Correction: Low-Rank Regularization for Learning Gene Expression Programs

Qing Nie, Jian-Feng Cai, Xiaohui Xie, 2014, PLoS ONE.

Incorporating Existing Network Information into Gene Network Inference

Qing Nie, Xiaohui Xie, Scott Christley, 2009, PloS one.