Mihkel Vaher

PlasmidSeeker: identification of known plasmids from bacterial whole genome sequencing reads

Maido Remm, Mikk Puustusmaa, M. Möls, 2018, PeerJ.

StrainSeeker: fast identification of bacterial strains from raw sequencing reads using user-provided guide trees

Reidar Andreson, Lauris Kaplinski, Maido Remm, 2017, PeerJ.