Norman E. Davey

发表

MobiDB 3.0: more annotations for intrinsic disorder, conformational diversity and interactions in proteins

Silvio C. E. Tosatto, Marco Necci, Damiano Piovesan, 2017, Nucleic Acids Res..

ELM—the database of eukaryotic linear motifs

Richard J. Edwards, Aidan Budd, Allegra Via, 2011, Nucleic Acids Res..

Integration and standardisation of intrinsically disordered protein data

Robert D. Finn, Alan Bridge, Zsuzsanna Dosztányi, 2019 .

SLiMSearch 2.0: biological context for short linear motifs in proteins

Richard J. Edwards, Denis C. Shields, Norman E. Davey, 2011, Nucleic Acids Res..

PSSMSearch: a server for modeling, visualization, proteome-wide discovery and annotation of protein motif specificity determinants

Norman E. Davey, Izabella Krystkowiak, Jean Manguy, 2018, Nucleic Acids Res..

CompariMotif: quick and easy comparisons of sequence motifs

Richard J. Edwards, Denis C. Shields, Norman E. Davey, 2008, Bioinform..

ELM: the status of the 2010 eukaryotic linear motif resource

Jakub Pas, Leszek Rychlewski, Aidan Budd, 2009, Nucleic Acids Res..

The HIV Mutation Browser: A Resource for Human Immunodeficiency Virus Mutagenesis and Polymorphism Data

Reinhard Schneider, Venkata P. Satagopam, Norman E. Davey, 2014, PLoS Comput. Biol..

Masking residues using context-specific evolutionary conservation significantly improves short linear motif discovery

Richard J. Edwards, Denis C. Shields, Norman E. Davey, 2009, Bioinform..

ELM 2016—data update and new functionality of the eukaryotic linear motif resource

Toby J. Gibson, Kim Van Roey, Manjeet Kumar, 2015, Nucleic Acids Res..

SLiMSearch: a framework for proteome-wide discovery and annotation of functional modules in intrinsically disordered regions

Norman E. Davey, Izabella Krystkowiak, N. Davey, 2017, Nucleic Acids Res..

SLiMSearch: A Webserver for Finding Novel Occurrences of Short Linear Motifs in Proteins, Incorporating Sequence Context

Richard J. Edwards, Denis C. Shields, Norman E. Davey, 2010, PRIB.

The eukaryotic linear motif resource ELM: 10 years and counting

Ignacio E. Sánchez, Aidan Budd, Marta Strumillo, 2013, Nucleic Acids Res..

The identification of short linear motif-mediated interfaces within the human interactome

Toby J. Gibson, Norman E. Davey, Robert J. Weatheritt, 2012, Bioinform..

ProViz - Protein POLYCHOME - PYM - O48533

Desmond G. Higgins, Denis C. Shields, Norman E. Davey, 2016 .

Absolute Net Charge and the Biological Activity of Oligopeptides

Richard J. Edwards, Marc Devocelle, Denis C. Shields, 2006, J. Chem. Inf. Model..

Web Server To Identify Similarity of Amino Acid Motifs to Compounds (SAAMCO)

Radka Svobodová Vareková, Fergal P. Casey, Denis C. Shields, 2008, J. Chem. Inf. Model..

ProViz—a web-based visualization tool to investigate the functional and evolutionary features of protein sequences

Desmond G. Higgins, Denis C. Shields, Norman E. Davey, 2016, Nucleic Acids Res..

The articles.ELM resource: simplifying access to protein linear motif literature by annotation, text-mining and classification

Cristina Marino Buslje, Toby J. Gibson, Norman E. Davey, 2020, Database J. Biol. Databases Curation.

Estimation and efficient computation of the true probability of recurrence of short linear protein sequence motifs in unrelated proteins

Richard J. Edwards, Denis C. Shields, Norman E. Davey, 2010, BMC Bioinformatics.

The eukaryotic linear motif resource – 2018 update

Toby J. Gibson, Kim Van Roey, Norman E. Davey, 2017, Nucleic Acids Res..

SLiMFinder: a web server to find novel, significantly over-represented, short protein motifs

Richard J. Edwards, Denis C. Shields, Norman E. Davey, 2010, Nucleic Acids Res..

The SLiMDisc server: short, linear motif discovery in proteins

Richard J. Edwards, Denis C. Shields, Norman E. Davey, 2007, Nucleic Acids Res..

MobiDB: intrinsically disordered proteins in 2021

Silvio C. E. Tosatto, Marco Necci, Damiano Piovesan, 2020, Nucleic Acids Res..

Protein Disorder and Short Conserved Motifs in Disordered Regions Are Enriched near the Cytoplasmic Side of Single-Pass Transmembrane Proteins

Denis C. Shields, Norman E. Davey, Kevin T. O'Brien, 2012, PloS one.

Multiple mechanisms determine the order of APC / C substrate degradation in mitosis

Norman E. Davey, David O. Morgan, N. Davey, 2014 .

Structure of the immature retroviral capsid at 8 Å resolution by cryo-electron microscopy

Norman E. Davey, Carsten Sachse, James D. Riches, 2012, Nature.

DisProt: intrinsic protein disorder annotation in 2020

Silvio C. E. Tosatto, Arne Elofsson, Marco Necci, 2019, Nucleic Acids Res..

DisProt 7.0: a major update of the database of disordered proteins

Sonia Longhi, Silvio C. E. Tosatto, Arne Elofsson, 2016, Nucleic Acids Res..

SLiMFinder: A Probabilistic Method for Identifying Over-Represented, Convergently Evolved, Short Linear Motifs in Proteins

Richard J. Edwards, Denis C. Shields, Norman E. Davey, 2007, PloS one.

SLiMDisc: short, linear motif discovery, correcting for common evolutionary descent

Richard J. Edwards, Denis C. Shields, Norman E. Davey, 2006, Nucleic acids research.

SLiMPrints: conservation-based discovery of functional motif fingerprints in intrinsically disordered protein regions

Richard J. Edwards, Denis C. Shields, Toby J. Gibson, 2012, Nucleic acids research.

A million peptide motifs for the molecular biologist.

M. Madan Babu, Toby J. Gibson, Peter Tompa, 2014, Molecular cell.

Marked Variability in the Extent of Protein Disorder within and between Viral Families

Denis C. Shields, Catherine Mooney, Norman E. Davey, 2013, PloS one.

Insights into RNA Biology from an Atlas of Mammalian mRNA-Binding Proteins

Norman E. Davey, L. Steinmetz, M. Hentze, 2012, Cell.

A structural biology community assessment of AlphaFold2 applications

Douglas E. V. Pires, Norman E. Davey, Carlos H. M. Rodrigues, 2021, bioRxiv.

Motif co-regulation and co-operativity are common mechanisms in transcriptional, post-transcriptional and post-translational regulation

Norman E. Davey, N. Davey, K. Van Roey, 2015, Cell Communication and Signaling.

Short linear motifs – ex nihilo evolution of protein regulation

Alan M. Moses, Norman E. Davey, M. Cyert, 2015, Cell Communication and Signaling.

Identification of motif-based interactions between SARS-CoV-2 protein domains and human peptide ligands pinpoint antiviral targets

Norman E. Davey, N. Davey, P. Jemth, 2022, bioRxiv.

Large-scale phage-based screening reveals extensive pan-viral mimicry of host short linear motifs

Norman E. Davey, N. Davey, E. Petsalaki, 2022, bioRxiv.

Proteome‐scale mapping of binding sites in the unstructured regions of the human proteome

Norman E. Davey, N. Davey, P. Jemth, 2022, Molecular systems biology.

How viruses hijack cell regulation.

Norman E. Davey, Gilles Travé, Toby J Gibson, 2011, Trends in biochemical sciences.

Large‐scale phosphomimetic screening identifies phospho‐modulated motif‐based protein interactions

Norman E. Davey, N. Davey, J. Nilsson, 2023, Molecular systems biology.

The next wave of interactomics: Mapping the SLiM-based interactions of the intrinsically disordered proteome.

Norman E. Davey, N. Davey, Y. Ivarsson, 2023, Current opinion in structural biology.

ELM—the eukaryotic linear motif resource in 2020

Norman E. Davey, Lucía B. Chemes, N. Davey, 2019, Nucleic Acids Res..

Attributes of short linear motifs.

Norman E. Davey, Robert J. Weatheritt, T. Gibson, 2012, Molecular bioSystems.

Critical assessment of protein intrinsic disorder prediction

Silvio C. E. Tosatto, Marco Necci, Damiano Piovesan, 2020, Nature Methods.

Conserved SQ and QS motifs in bacterial effectors suggest pathogen interplay with the ATM kinase family during infection

Norman E. Davey, T. Gibson, N. Davey, 2018, bioRxiv.

Proteome-wide analysis of human disease mutations in short linear motifs: neglected players in cancer?

Norman E. Davey, Robert J. Weatheritt, T. Gibson, 2014, Molecular bioSystems.

The Eukaryotic Linear Motif resource: 2022 release

Norman E. Davey, T. Gibson, N. Davey, 2021, Nucleic Acids Res..

Large scale discovery of coronavirus-host factor protein interaction motifs reveals SARS-CoV-2 specific mechanisms and vulnerabilities

Norman E. Davey, M. Mann, N. Davey, 2021, Nature Communications.

Building a Regulatory Network with Short Linear Sequence Motifs: Lessons from the Degrons of the Anaphase-Promoting Complex.

Norman E. Davey, N. Davey, D. Morgan, 2016, Molecular cell.

Short linear motifs: ubiquitous and functionally diverse protein interaction modules directing cell regulation.

Aidan Budd, Norman E. Davey, Holger Dinkel, 2014, Chemical reviews.

Acetylome Profiling Reveals Overlap in the Regulation of Diverse Processes by Sirtuins, Gcn5, and Esa1*

Norman E. Davey, N. Krogan, D. Toczyski, 2014, Molecular & Cellular Proteomics.

The switches.ELM Resource: A Compendium of Conditional Regulatory Interaction Interfaces

Norman E. Davey, Robert J. Weatheritt, Kim Van Roey, 2013, Science Signaling.

PP1 and PP2A Use Opposite Phospho-dependencies to Control Distinct Processes at the Kinetochore

Norman E. Davey, A. Ciliberto, N. Davey, 2019, bioRxiv.

A Conserved Motif Provides Binding Specificity to the PP2A-B56 Phosphatase.

Norman E. Davey, J. Olsen, N. Davey, 2016, Molecular cell.

SLiM-binding pockets: an attractive target for broad-spectrum antivirals.

Norman E. Davey, N. Davey, J. Nilsson, 2023, Trends in biochemical sciences.

Global substrate identification and high throughput in vitro dephosphorylation reactions uncover PP1 and PP2A-B55 specificity principles

Norman E. Davey, Jamin B. Hein, J. Nilsson, 2023, bioRxiv.

Exploring the diversity of SPRY/B30.2-mediated interactions.

Manuela Helmer-Citterich, Livia Perfetto, Pier Federico Gherardini, 2013, Trends in biochemical sciences.

Systematic discovery of Short Linear Motifs decodes calcineurin phosphatase signaling

Norman E. Davey, A. Gingras, M. Cyert, 2019, bioRxiv.

The ABBA motif binds APC/C activators and is shared by APC/C substrates and regulators.

Norman E. Davey, T. Gibson, N. Davey, 2015, Developmental cell.

JCB_201402041 23..40

Norman E. Davey, N. Davey, D. Morgan, 2014 .

Systematic identification of recognition motifs for the hub protein LC8

Norman E. Davey, N. Davey, D. Hendrix, 2019, Life Science Alliance.

Discovery of short linear motif‐mediated interactions through phage display of intrinsically disordered regions of the human proteome

Norman E. Davey, Philip M. Kim, N. Davey, 2017, The FEBS journal.

SIRT3 controls brown fat thermogenesis by deacetylation regulation of pathways upstream of UCP1

Norman E. Davey, N. Krogan, N. Davey, 2019, Molecular metabolism.

Proteome-scale amino-acid resolution footprinting of protein-binding sites in the intrinsically disordered regions of the human proteome

Norman E. Davey, P. Jemth, Y. Ivarsson, 2021, bioRxiv.

The Mitotic Checkpoint Complex Requires an Evolutionary Conserved Cassette to Bind and Inhibit Active APC/C

Norman E. Davey, N. Davey, C. Wurzenberger, 2016, Molecular cell.

Linear motifs confer functional diversity onto splice variants

Norman E. Davey, Robert J. Weatheritt, T. Gibson, 2012, Nucleic acids research.

Phosphorylation-dependent substrate selectivity of protein kinase B (AKT1)

Norman E. Davey, Jared L. Johnson, Huadong Liu, 2020, The Journal of Biological Chemistry.

A Conserved Motif Provide s Binding Specificity to the PP 2 A-B 56 Phosphatase Graphical Abstract Highlights

Norman E. Davey, J. Olsen, N. Davey, 2016 .

How viral proteins bind short linear motifs and intrinsically disordered domains.

Norman E. Davey, N. Davey, Y. Ivarsson, 2022, Essays in biochemistry.

ProP-PD for proteome-wide motif-mediated interaction discovery.

Norman E. Davey, N. Davey, Y. Ivarsson, 2022, Trends in biochemical sciences.

The functional importance of structure in unstructured protein regions.

Norman E. Davey, Norman E Davey, N. Davey, 2019, Current opinion in structural biology.

The Ebola Virus Nucleoprotein Recruits the Host PP2A-B56 Phosphatase to Activate Transcriptional Support Activity of VP30.

Norman E. Davey, N. Davey, Emil P. T. Hertz, 2018, Molecular cell.

Computational identification and analysis of protein short linear motifs.

Richard J. Edwards, Norman E. Davey, Richard J Edwards, 2010, Frontiers in bioscience.

A Screen for Candidate Targets of Lysine Polyphosphorylation Uncovers a Conserved Network Implicated in Ribosome Biogenesis.

Norman E. Davey, A. Golshani, N. Davey, 2018, Cell reports.

Large-scale identification of phospho-modulated motif-based protein-protein interactions

Norman E. Davey, N. Davey, J. Nilsson, 2022, bioRxiv.

A Consensus Binding Motif for the PP4 Protein Phosphatase.

Norman E. Davey, N. Davey, G. Montoya, 2019, Molecular cell.

EnzymePredictor: a tool for predicting and visualizing enzymatic cleavages of digested proteins.

Norman E. Davey, Nora Khaldi, Denis C Shields, 2012, Journal of proteome research.

A Proteome-wide Screen for Mammalian SxIP Motif-Containing Microtubule Plus-End Tracking Proteins

Norman E. Davey, T. Gibson, Jeroen A. A. Demmers, 2012, Current Biology.

Motif switches: decision-making in cell regulation.

Norman E. Davey, Kim Van Roey, Toby J Gibson, 2012, Current opinion in structural biology.

Interactome-wide prediction of short, disordered protein interaction motifs in humans.

Richard J. Edwards, Norman E. Davey, Kevin T. O'Brien, 2012, Molecular bioSystems.

In silico protein motif discovery and structural analysis.

Gianluca Pollastri, Ian Walsh, Catherine Mooney, 2011, Methods in molecular biology.

xProtCAS: A Toolkit for Extracting Conserved Accessible Surfaces from Protein Structures

Norman E. Davey, Hazem M. Kotb, 2023, Biomolecules.

Comprehensive Analysis of G1 Cyclin Docking Motif Sequences that Control CDK Regulatory Potency In Vivo

Norman E. Davey, N. Davey, M. Loog, 2020, Current Biology.

Comprehensive analysis of fungal G1 cyclin docking motif sequences that control CDK regulatory potency in vivo

Norman E. Davey, N. Davey, M. Loog, 2020, bioRxiv.

Properties of the Adeno-Associated Virus Assembly-Activating Protein

Norman E. Davey, N. Davey, J. Kleinschmidt, 2012, Journal of Virology.

Insights into RNA Biology from an Atlas of Mammalian mRNA-Binding Proteins

Norman E. Davey, L. Steinmetz, M. Hentze, 2012, Cell.

An intrinsically disordered proteins community for ELIXIR

Silvio C. E. Tosatto, Richard J. Edwards, Norman E. Davey, 2019, F1000Research.

A million peptide motifs for the molecular biologist.

Norman E. Davey, T. Gibson, M. Babu, 2014, Molecular cell.

Cryo-Electron Tomography of Marburg Virus Particles and Their Morphogenesis within Infected Cells

Norman E. Davey, N. Davey, J. Briggs, 2011, PLoS biology.

A functional interaction between liprin-α1 and B56γ regulatory subunit of protein phosphatase 2A supports tumor cell motility

Norman E. Davey, N. Davey, Marta Ripamonti, 2022, Communications Biology.

The SLiMDisc server: short, linear motif discovery in proteins

Richard J. Edwards, Norman E. Davey, D. Shields, 2007, Nucleic Acids Res..

15N detection harnesses the slow relaxation property of nitrogen: Delivering enhanced resolution for intrinsically disordered proteins

Norman E. Davey, N. Davey, G. Wagner, 2018, Proceedings of the National Academy of Sciences.

DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation

Silvio C. E. Tosatto, Cristina Marino Buslje, Konstantinos D. Tsirigos, 2021, Nucleic Acids Res..

Minimum information guidelines for experiments structurally characterizing intrinsically disordered protein regions

Silvio C. E. Tosatto, Norman E. Davey, J. Hoch, 2023, Nature Methods.

MIADE metadata guidelines: Minimum Information About a Disorder Experiment

Silvio C. E. Tosatto, Norman E. Davey, J. Hoch, 2022, bioRxiv.

Proteome-wide analysis of human disease mutations in short linear motifs: neglected players in cancer?

Norman E. Davey, Robert J. Weatheritt, T. Gibson, 2014, Molecular bioSystems.

Multiple mechanisms determine the order of APC/C substrate degradation in mitosis

Norman E. Davey, D. Morgan, S. Foster, 2014, The Journal of cell biology.