Steffen Heber

发表

riboStreamR: A web application for quality control, analysis, and visualization of Ribo-seq data

Patrick Perkins, Steffen Heber, 2017, ICCABS.

Common intervals and sorting by reversals: a marriage of necessity

Jens Stoye, Anne Bergeron, Steffen Heber, 2002, ECCB.

Algorithms for Finding Gene Clusters

Jens Stoye, Steffen Heber, J. Stoye, 2001, WABI.

Unsupervised assessment of microarray data quality using a Gaussian mixture model

Beate Sick, Brian E. Howard, Steffen Heber, 2009, BMC Bioinformatics.

Mining transcript features related to translation in Arabidopsis using LASSO and random forest

José M. Alonso, Anna N. Stepanova, Steffen Heber, 2015, 2015 IEEE 5th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS).

Using a Novel Negative Selection Inspired Anomaly Detection Algorithm to Identify Corrupted Ribo-seq and RNA-seq Samples

Steffen Heber, Patrick Perkins, S. Heber, 2019, BCB.

Splicing graphs and EST assembly problem

Haixu Tang, Pavel A. Pevzner, Sing-Hoi Sze, 2002, ISMB.

RiboSimR: A Tool for Simulation and Power Analysis of Ribo-seq Data

José M. Alonso, Anna N. Stepanova, Patrick Perkins, 2019, ICCABS.

A parallel island model for biogeography-based classification rule mining in julia

Effat Farhana, Steffen Heber, Samuel Ebert, 2018, GECCO.

RACE: Remote Analysis Computation for gene Expression data

Beate Sick, Gnanasekaran Thoppae, Steffen Heber, 2005, Nucleic Acids Res..

Deep sequencing of ribosomal footprints for studying genome-wide mRNA translation in plants

José M. Alonso, Anna N. Stepanova, Steffen Heber, 2013, 2013 IEEE 3rd International Conference on Computational Advances in Bio and medical Sciences (ICCABS).

Resampling Methods in Physical Mapping

Martin Vingron, Jens Stoye, Marcus Frohme, 2002 .

Analysis of Cis-Regulatory Motifs in Cassette Exons by Incorporating Exon Skipping Rates

Jihye Kim, Steffen Heber, Sihui Zhao, 2009, ISBRA.

Correcting Base-Assignment Errors in Repeat Regions of Shotgun Assembly

Haixu Tang, Uri Keich, Pavel A. Pevzner, 2007, IEEE ACM Trans. Comput. Biol. Bioinform..

Automatic quality assessment of Affymetrix GeneChip data

Beate Sick, Steffen Heber, 2006, ACM-SE 44.

Practical Quality Assessment of Microarray Data by Simulation of Differential Gene Expression

Beate Sick, Brian E. Howard, Steffen Heber, 2009, ISBRA.

Quality Assessment of Affymetrix GeneChip Data using the EM Algorithm and a Naive Bayes Classifier

Beate Sick, Brian E. Howard, Steffen Heber, 2007, 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering.

Towards reliable isoform quantification using RNA-SEQ data

Brian E. Howard, Steffen Heber, S. Heber, 2009, 2009 IEEE International Conference on Bioinformatics and Biomedicine.

PeakPass: Automating ChIP-Seq Blacklist Creation

Steffen Heber, Charles E. Wimberley, S. Heber, 2019, ISBRA.

Towards Reliable Isoform Quantification Using RNA-Seq Data

Brian E. Howard, Steffen Heber, 2009, BIBM.

Large-scale Discovery of Regulatory Motifs Involved in Alternative Splicing

Jihye Kim, Steffen Heber, Sihui Zhao, 2007, 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering.

Biogeography-based rule mining for classification

Effat Farhana, Steffen Heber, S. Heber, 2017, GECCO.

Contig selection in physical mapping

Martin Vingron, Jens Stoye, Steffen Heber, 2000, RECOMB '00.

A Stacking-Based Approach to Identify Translated Upstream Open Reading Frames in Arabidopsis Thaliana

José M. Alonso, Anna N. Stepanova, Steffen Heber, 2015, ISBRA.

Common Intervals of Multiple Permutations

Jens Stoye, Richard Mayr, Steffen Heber, 2011, Algorithmica.

Identification of Ribosome Pause Sites Using a Z-Score Based Peak Detection Algorithm

Steffen Heber, Patrick Perkins, S. Heber, 2018, 2018 IEEE 8th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS).

Common intervals of trees

Carla D. Savage, Steffen Heber, S. Heber, 2005, Inf. Process. Lett..

Finding All Common Intervals of k Permutations

Jens Stoye, Steffen Heber, J. Stoye, 2001, CPM.

PeakPass: Automating ChIP-Seq Blacklist Creation

Steffen Heber, Charles E. Wimberley, Charles E Wimberley, 2019, ISBRA.

Improved RNA-Seq Partitions in Linear Models for Isoform Quantification

Brian E. Howard, Steffen Heber, Paola Veronese, 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine.

Finding association rules of cis-regulatory elements involved in alternative splicing

Jihye Kim, Steffen Heber, Sihui Zhao, 2007, ACM-SE 45.

Mining of cis-Regulatory Motifs Associated with Tissue-Specific Alternative Splicing

Jihye Kim, Brian E. Howard, Steffen Heber, 2009, ISBRA.

Statistical Approaches to Identifying Androgen Response Elements

Li Li, Qiang Zhang, Melvin E. Andersen, 2007, Seventh IEEE International Conference on Data Mining Workshops (ICDMW 2007).

Identifying the Signatures of Missing Transcripts

Effat Farhana, Steffen Heber, Bhupinder Sehra, 2018, 2018 IEEE 8th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS).

Quality assessment of Affymetrix GeneChip data.

Beate Sick, Steffen Heber, S. Heber, 2006, Omics : a journal of integrative biology.

Quality Assessment ofAffymetrix GeneChip Data usingtheEM Algorithm and aNaiveBayes Classifier

Beate Sick, Steffen Heber, S. Heber, 2009 .

Workshop: Using a transcript catalog and paired-end RNA-Seq data to identify differential alternative splicing

Brian E. Howard, Xiaoping Tan, Steffen Heber, 2011, 2011 IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences (ICCABS).

riboStreamR: A web application for quality control, analysis, and visualization of Ribo-seq data

Patrick Perkins, Steffen Heber, 2017 .

High-Throughput RNA Sequencing of Pseudomonas-Infected Arabidopsis Reveals Hidden Transcriptome Complexity and Novel Splice Variants

Brian E. Howard, Steffen Heber, Ahmet Can Babaoglu, 2013, PloS one.

In silico prediction of yeast deletion phenotypes.

Steffen Heber, S. Heber, Soma Saha, 2006, Genetics and molecular research : GMR.

Gene-Specific Translation Regulation Mediated by the Hormone-Signaling Molecule EIN2

Anna N. Stepanova, Steffen Heber, Paul Enríquez, 2015, Cell.

A Ribosome Footprinting Protocol for Plants

Anna N. Stepanova, Steffen Heber, Qiwen Hu, 2016 .

Genome-Wide Search for Translated Upstream Open Reading Frames in Arabidopsis Thaliana

Anna N. Stepanova, Steffen Heber, Qiwen Hu, 2016, IEEE Transactions on NanoBioscience.