Vsevolod J. Makeev

发表

Segmentation of long genomic sequences into domains with homogeneous composition with BASIO software

Mikhail A. Roytberg, Vladimir G. Tumanyan, Vasily Ramensky, 2001, Bioinform..

Analysis of bacterial RM-Systems through genome-scale analysis and related taxonomic issues

Vsevolod J. Makeev, Mathias Vandenbogaert, 2003, Silico Biol..

Short fuzzy tandem repeats in genomic sequences, identification, and possible role in regulation of gene expression

Mireille Régnier, Vsevolod J. Makeev, Dmitri A. Papatsenko, 2006, Bioinform..

Empirical Potentials for ion Binding in proteins

Vsevolod J. Makeev, Sergei Rahmanov, Ivan V. Kulakovskiy, 2010, J. Bioinform. Comput. Biol..

HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models

Vladimir B. Bajic, Haitham Ashoor, Wail Ba-alawi, 2015, Nucleic Acids Res..

What Do Neighbors Tell About You: The Local Context of Cis-Regulatory Modules Complicates Prediction of Regulatory Variants

Vsevolod J. Makeev, Ivan V. Kulakovskiy, Ilya E. Vorontsov, 2019, Front. Genet..

Exploring Massive, Genome Scale Datasets with the GenometriCorr Package

Andrey A. Mironov, Sarah J. Wheelan, Vsevolod J. Makeev, 2012, PLoS Comput. Biol..

Bayesian Approach to DNA Segmentation into Regions with Different Average Nucleotide Composition

Mikhail S. Gelfand, Mikhail A. Roytberg, Vladimir G. Tumanyan, 2000, JOBIM.

HOCOMOCO: a comprehensive collection of human transcription factor binding sites models

Vladimir B. Bajic, Ulf Schaefer, Vsevolod J. Makeev, 2012, Nucleic Acids Res..

The channel in transporters is formed by residues that are rare in transmembrane helices

Mikhail S. Gelfand, Vsevolod J. Makeev, Roman A. Sutormin, 2003, Silico Biol..

Search of periodicities in primary structure of biopolymers: a general Fourier approach

Vladimir G. Tumanyan, Vsevolod J. Makeev, V. Makeev, 1996, Comput. Appl. Biosci..

GPGPU-assisted prediction of ion binding sites in proteins

Vsevolod J. Makeev, Sergei Rahmanov, L. A. Uroshlev, 2011 .

PERFECTOS-APE - Predicting Regulatory Functional Effect of SNPs by Approximate P-value Estimation

Vsevolod J. Makeev, Ivan V. Kulakovskiy, Ilya E. Vorontsov, 2015, BIOINFORMATICS.

DNA Segmentation Through the Bayesian Approach

Mikhail A. Roytberg, Vladimir G. Tumanyan, Vasily Ramensky, 2000, J. Comput. Biol..

HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis

F. A. Kolpakov, Vladimir B. Bajic, Arturo Magana-Mora, 2017, Nucleic Acids Res..

Learning Advanced TFBS Models from Chip-Seq Data - diChIPMunk: Effective Construction of Dinucleotide Positional Weight Matrices

Victor G. Levitsky, Vsevolod J. Makeev, Ivan V. Kulakovskiy, 2013, BIOINFORMATICS.

A promoter-level mammalian expression atlas

Cesare Furlanello, Finn Drabløs, Carsten O. Daub, 2015 .

Exact p-value calculation for heterotypic clusters of regulatory motifs and its application in computational annotation of cis-regulatory modules

Mireille Régnier, Julien Clément, Mikhail A. Roytberg, 2007, Algorithms for Molecular Biology.

Motif discovery and motif finding from genome-mapped DNase footprint data

Vsevolod J. Makeev, Alexander V. Favorov, Ivan V. Kulakovskiy, 2009, Bioinform..

Three Variations on Word Counting

Mireille Régnier, Vsevolod J. Makeev, Alexandre Lifanov, 2000, German Conference on Bioinformatics.

A Gibbs sampler for identification of symmetrically structured, spaced DNA motifs with improved estimation of the signal length

Mikhail S. Gelfand, Andrey A. Mironov, Vsevolod J. Makeev, 2005, Bioinform..

From binding motifs in Chip-seq Data to Improved Models of transcription factor binding Sites

Victor G. Levitsky, Vsevolod J. Makeev, Dmitry Yu. Oshchepkov, 2013, J. Bioinform. Comput. Biol..

Jaccard index based similarity measure to compare transcription factor binding site models

Vsevolod J. Makeev, Ivan V. Kulakovskiy, Ilya E. Vorontsov, 2013, Algorithms for Molecular Biology.

Deep and wide digging for binding motifs in ChIP-Seq data

Vsevolod J. Makeev, Alexander V. Favorov, Valentina Boeva, 2010, Bioinform..

A Generalized Hidden Markov Model for Prediction of Cis-regulatory Modules in Eukaryote Genomes and Description of Their Internal Structure

Andrey A. Mironov, Vsevolod J. Makeev, Alexander V. Favorov, 2012, BIOINFORMATICS.

A deeper look into transcription regulatory code by preferred pair distance templates for transcription factor binding sites

Vsevolod J. Makeev, Natalia G. Esipova, Ivan V. Kulakovskiy, 2011, Bioinform..

GTRD: an integrated view of transcription regulation

Alexander E. Kel, Vsevolod J. Makeev, Fedor A. Kolpakov, 2020, Nucleic Acids Res..

Preferred distances between transcription factor binding sites

Vsevolod J. Makeev, Ivan V. Kulakovskiy, Artem S. Kasianov, 2011 .

Negative selection maintains transcription factor binding motifs in human cancer

Vsevolod J. Makeev, Ivan V. Kulakovskiy, Ilya E. Vorontsov, 2016, BMC Genomics.

Single-Cell Analyses of ESCs Reveal Alternative Pluripotent Cell States and Molecular Mechanisms that Control Self-Renewal

Ben D. MacArthur, Dmitri Papatsenko, Vsevolod J. Makeev, 2015, Stem cell reports.