Vincent B. Chen

发表

Graphical tools for macromolecular crystallography in PHENIX

Randy J. Read, Airlie J. McCoy, Paul D. Adams, 2012, Journal of applied crystallography.

CaBLAM for chiropraxis in cryoEM, UnDowser to rethink “waters”, and NGL Viewer to recapture online 3D graphics in MolProbity validation

Christopher J. Williams, Vincent B. Chen, David C. Richardson, 2019, bioRxiv.

KiNG and kinemages

Vincent B. Chen, David C. Richardson, Jane S. Richardson, 2012 .

Use of knowledge-based restraints in phenix.refine to improve macromolecular refinement at low resolution

Paul D. Adams, Nathaniel Echols, Ralf W. Grosse-Kunstleve, 2012, Acta crystallographica. Section D, Biological crystallography.

Model validation: local diagnosis, correction and when to quit

Christopher J. Williams, Vincent B. Chen, David C. Richardson, 2018, Acta crystallographica. Section D, Structural biology.

KinImmerse: Macromolecular VR for NMR ensembles

David J. Zielinski, Rachael Brady, Vincent B. Chen, 2008, Source Code for Biology and Medicine.

Acta Crystallographica Section D Biological

Randy J. Read, Airlie J. McCoy, Paul D. Adams, 2003 .

Phenix - a comprehensive python-based system for macromolecular structure solution

Randy J. Read, Airlie J. McCoy, Paul D. Adams, 2012 .

Nucleic Acids Research Advance Access published April 22, 2007 MolProbity: all-atom contacts and structure validation for proteins and nucleic acids

Jack Snoeyink, Andrew Leaver-Fay, Xueyi Wang, 2007 .

MolProbity: all-atom structure validation for macromolecular crystallography

Vincent B. Chen, Jeffrey J. Headd, David C. Richardson, 2009, Acta crystallographica. Section D, Biological crystallography.

Correspondence e-mail:

Vincent B. Chen, Gary J. Kapral, W. B. Arendall, 2000 .

phenix.model_vs_data: a high-level tool for the calculation of crystallographic model and data statistics

Paul D. Adams, Ralf W. Grosse-Kunstleve, Pavel V. Afonine, 2010, Journal of applied crystallography.

Improving SARS-CoV-2 structures: Peer review by early coordinate release

Christopher J. Williams, Vincent B. Chen, J. Richardson, 2021, Biophysical Journal.

Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix

Christopher J. Williams, Randy J Read, Gábor Bunkóczi, 2019, Acta crystallographica. Section D, Structural biology.

The Phenix software for automated determination of macromolecular structures.

Nathaniel Echols, Randy J Read, Gábor Bunkóczi, 2011, Methods.

New tools in MolProbity validation: CaBLAM for CryoEM backbone, UnDowser to rethink “waters,” and NGL Viewer to recapture online 3D graphics

Christopher J. Williams, Vincent B. Chen, Vincent B Chen, 2019, Protein science : a publication of the Protein Society.

MolProbity: More and better reference data for improved all‐atom structure validation

Christopher J. Williams, Jack Snoeyink, Vishal Verma, 2018, Protein science : a publication of the Protein Society.

Structures of the Bacterial Ribosome in Classical and Hybrid States of tRNA Binding

Vincent B. Chen, Vincent B Chen, Michael B. Feldman, 2011, Science.

CERES: a cryo-EM re-refinement system for continuous improvement of deposited models

Vincent B. Chen, P. Adams, P. Afonine, 2021, Acta crystallographica. Section D, Structural biology.

Building Better Backbones: Visualizations, Analyses, and Tools for Higher Quality Macromolecular Structure Models

Vincent B. Chen, Vincent Bin-Han Chen, 2010 .

KING (Kinemage, Next Generation): A versatile interactive molecular and scientific visualization program

Vincent B. Chen, Vincent B Chen, David C Richardson, 2009, Protein science : a publication of the Protein Society.

Assessment of detailed conformations suggests strategies for improving cryoEM models: Helix at lower resolution, ensembles, pre-refinement fixups, and validation at multi-residue length scale.

Christopher J. Williams, Vincent B. Chen, Vincent B Chen, 2018, Journal of structural biology.

The other 90% of the protein: Assessment beyond the Cαs for CASP8 template‐based and high‐accuracy models

Christopher J. Williams, Adam Zemla, Vincent B. Chen, 2009, Proteins.

assessment Authors:

Christopher J. Williams, Vincent B. Chen, Jeremy N. Block, 2009 .

Acta Crystallographica Section D Biological

Vincent B. Chen, Ian W. Davis, Gary J. Kapral, 2001 .

MolProbity: all-atom structure validation for macromolecular crystallography

Vincent B. Chen, Gary J. Kapral, W. B. Arendall, 2009, Acta crystallographica. Section D, Biological crystallography.

MolProbity: all-atom contacts and structure validation for proteins and nucleic acids

Vincent B. Chen, Ian W. Davis, Jeremy N. Block, 2007, Nucleic Acids Res..

MolProbity: all-atom contacts and structure validation for proteins and nucleic acids

Vincent B. Chen, Ian W. Davis, Jeremy N. Block, 2007 .

MolProbity: all-atom contacts and structure validation for proteins and nucleic acids

Vincent B. Chen, Ian W. Davis, Jeremy N. Block, 2007 .

PHENIX: a comprehensive Python-based system for macromolecular structure solution

Vincent B. Chen, Gary J. Kapral, J. Richardson, 2010, Acta crystallographica. Section D, Biological crystallography.

The other 90% of the protein: Assessment beyond the Cαs for CASP8 template‐based and high‐accuracy models

Christopher J. Williams, Vincent B. Chen, Jeremy N. Block, 2009, Proteins.

Biological Crystallography Use of Knowledge-based Restraints in Phenix.refine to Improve Macromolecular Refinement at Low Resolution

Vincent B. Chen, J. Headd, N. Echols, 2011 .

PHENIX: a comprehensive Python-based system for macromolecular structure solution

Vincent B. Chen, Gary J. Kapral, J. Headd, 2010, Acta crystallographica. Section D, Biological crystallography.

MolProbity: all-atom structure validation for macromolecular crystallography

Vincent B. Chen, Gary J. Kapral, W. B. Arendall, 2009, Acta crystallographica. Section D, Biological crystallography.