Emmanuelle Becker

发表

A Strategy for Interaction Site Prediction between Phospho-binding Modules and their Partners Identified from Proteomic Data*

R. Guérois, F. Ochsenbein, S. Miron, 2010, Molecular & Cellular Proteomics.

Exposure to the widely used herbicide atrazine results in deregulation of global tissue-specific RNA transcription in the third generation and is associated with a global decrease of histone trimethylation in mice

B. Jégou, S. Tevosian, P. Khil, 2016, Nucleic acids research.

The conserved histone deacetylase Rpd3 and the DNA binding regulator Ume6 repress BOI1's meiotic transcript isoform during vegetative growth in Saccharomyces cerevisiae

M. J. Law, M. Primig, Yuchen Liu, 2016, Molecular microbiology.

Integrated RNA- and protein profiling of fermentation and respiration in diploid budding yeast provides insight into nutrient control of cell growth and development.

Ronald W. Davis, M. J. Law, C. Pineau, 2015, Journal of proteomics.

Global alterations of the transcriptional landscape during yeast growth and development in the absence of Ume6-dependent chromatin modification

M. J. Law, M. Primig, A. Lardenois, 2015, Molecular Genetics and Genomics.

The protein expression landscape of mitosis and meiosis in diploid budding yeast.

C. Pineau, M. Primig, E. Com, 2017, Journal of proteomics.

The anti-cancer drug 5-fluorouracil affects cell cycle regulators and potential regulatory long non-coding RNAs in yeast

M. Primig, A. Morillon, M. Wery, 2019, RNA biology.

EXOSC10/Rrp6 is essential for the eight-cell embryo/morula transition.

M. Primig, S. P. Jamin, Emmanuelle Becker, 2021, Developmental biology.

Ndt80 activates the meiotic ORC1 transcript isoform and SMA2 via a bi-directional middle sporulation element in Saccharomyces cerevisiae

A. Chu, M. Primig, J. Horecka, 2016, RNA biology.

The conserved histone deacetylase Rpd3 and the DNA binding regulator Ume6 repress BOI1's meiotic transcript isoform during vegetative growth in Saccharomyces cerevisiae

M. J. Law, M. Primig, Yuchen Liu, 2015, Molecular microbiology.

Combining RNA and Protein Profiling Data with Network Interactions Identifies Genes Associated with Spermatogenesis in Mouse and Human1

M. Primig, B. Jégou, F. Chalmel, 2015, Biology of reproduction.

The epigenetic processes of meiosis in male mice are broadly affected by the widely used herbicide atrazine

M. Primig, B. Jégou, F. Chalmel, 2015, BMC Genomics.

Multifunctional proteins revealed by overlapping clustering in protein interaction network

Alain Guénoche, Marie-Christine Brun, Charles E. Chapple, 2011, Bioinform..

Structural basis for the interaction of Asf1 with histone H3 and its functional implications

R. Guérois, F. Ochsenbein, J. Thuret, 2005, Proceedings of the National Academy of Sciences of the United States of America.

The ReproGenomics Viewer: an integrative cross-species toolbox for the reproductive science community

Olivier Sallou, Frédéric Chalmel, Olivier Collin, 2015, Nucleic Acids Res..

EXOSC10/Rrp6 is essential for the eight-cell embryo/morula transition

M. Primig, S. P. Jamin, Emmanuelle Becker, 2021, bioRxiv.

Functional Integrative Levels in the Human Interactome Recapitulate Organ Organization

Carlos Prieto, Christine Brun, Alia Benkahla, 2011, PloS one.

Extreme multifunctional proteins identified from a human protein interaction network

Lionel Spinelli, Christine Brun, Charles E. Chapple, 2015, Nature Communications.

Clinicopathological characteristics of ROS1- and RET-rearranged NSCLC in caucasian patients. Data from a cohort of 713 non-squamous NSCLC lacking KRAS/EGFR/HER2/BRAF/PIK3CA/ALK alterations.

N. Rioux-Leclercq, H. Léna, Sarah Medane, 2017, Oncotarget.

Seminal Simian Immunodeficiency Virus in Chronically Infected Cynomolgus Macaques Is Dominated by Virus Originating from Multiple Genital Organs

M. Pérez‐Losada, K. Crandall, B. Keele, 2018, Journal of Virology.

The conserved histone deacetylase Rpd3 and its DNA binding subunit Ume6 control dynamic transcript architecture during mitotic growth and meiotic development

Ronald W. Davis, M. J. Law, Michael P. Snyder, 2014, Nucleic acids research.

Direct Iterative Protein Profiling (DIPP) - an Innovative Method for Large-scale Protein Detection Applied to Budding Yeast Mitosis*

C. Pineau, M. Primig, A. Lardenois, 2011, Molecular & Cellular Proteomics.

The histone deacetylase Rpd3/Sin3/Ume6 complex represses an acetate‐inducible isoform of VTH2 in fermenting budding yeast cells

M. J. Law, M. Primig, Emmanuelle Becker, 2015, FEBS letters.

HMM-Kalign: a tool for generating sub-optimal HMM alignments

Raphaël Guérois, Vincent Meyer, Hocine Madaoui, 2007, Bioinform..

TOXsIgN: a cross‐species repository for toxicogenomic signatures

Olivier Sallou, Frédéric Chalmel, Cécile Chevrier, 2018, Bioinform..

Fixing molecular complexes in BioPAX standards to enrich interactions and detect redundancies using semantic web technologies

F. Moreews, O. Dameron, F. Gondret, 2023, Bioinformatics.

Clinicopathological characteristics of ROS1- and RET-rearranged NSCLC in caucasian patients: Data from a cohort of 713 non-squamous NSCLC lacking KRAS/EGFR/HER2/BRAF/PIK3CA/ALK alterations

N. Rioux-Leclercq, H. Léna, Sarah Medane, 2017, Oncotarget.

Plasma microRNA signature in presymptomatic and symptomatic subjects with C9orf72-associated frontotemporal dementia and amyotrophic lateral sclerosis

F. Pasquier, O. Colliot, S. Forlani, 2020, Journal of Neurology, Neurosurgery, and Psychiatry.

The epigenetic processes of meiosis in male mice are broadly affected by the widely used herbicide atrazine

M. Primig, B. Jégou, F. Chalmel, 2015, BMC Genomics.

Detection of a tandem BRCT in Nbs1 and Xrs2 with functional implications in the DNA damage response

Raphaël Guerois, Vincent Meyer, Hocine Madaoui, 2006, Bioinform..

Structural bioinformatics Detection of a tandem BRCT in Nbs 1 and Xrs 2 with functional implications in the DNA damage response

R. Guérois, Hocine Madaoui, V. Meyer, 2006 .

PAX2GRAPHML: a python library for large-scale regulation network analysis using BioPAX

Anne Siegel, Florence Gondret, François Moreews, 2021, Bioinform..

Towards a reproducible interactome: semantic-based detection of redundancies to unify protein-protein interaction databases

G. Rabut, O. Dameron, Emmanuelle Becker, 2022, Bioinform..

Global alterations of the transcriptional landscape during yeast growth and development in the absence of Ume6-dependent chromatin modification

M. J. Law, M. Primig, A. Lardenois, 2015, Molecular Genetics and Genomics.

Ndt 80 activates an isoform of ORC 1 and SMA 2 via a bi-directional MSE motif Ndt 80 activates the meiotic ORC 1 transcript isoform and SMA 2 via a bi-directional middle sporulation element in Saccharomyces cerevisiae

Ronald W. Davis, A. Chu, M. Primig, 2016 .

Extreme multifunctional proteins identified from a human protein interaction network

Charles E. Chapple, C. Brun, Benoît Robisson, 2015, Nature Communications.

TOXsIgN: a cross‐species repository for toxicogenomic signatures

O. Collin, B. Jégou, C. Chevrier, 2018, Bioinform..

HMM-Kalign: a tool for generating sub-optimal HMM alignments

R. Guérois, Hocine Madaoui, Aurélie Cotillard, 2007, Bioinform..