Rui-Xiang Sun

A theoretical foundation of the target-decoy search strategy for false discovery rate control in proteomics

Chao Liu, Si-Min He, Lan Luo, 2015, 1501.00537.

Preprocessing of Tandem Mass Spectrometric Data Based on Decision Tree Classification

Si-Min He, Wen Gao, Rui-Xiang Sun, 2016, Genomics, proteomics & bioinformatics.

Comprehensive identification of peptides in tandem mass spectra using an efficient open search engine

Chao Liu, Hao Yang, Tao Liu, 2018, Nature Biotechnology.

A high-speed search engine pLink 2 with systematic evaluation for proteome-scale identification of cross-linked peptides

Hao Chi, Chao Liu, Si-Min He, 2019, Nature Communications.

pFind-Alioth: A novel unrestricted database search algorithm to improve the interpretation of high-resolution MS/MS data.

Kun Zhang, Zhen Chen, Hao Chi, 2015, Journal of proteomics.