A. Tahmasebi

发表

Network for network concept offers new insights into host- SARS-CoV-2 protein interactions and potential novel targets for developing antiviral drugs

P. Guzzi, K. Izadpanah, S. Samarfard, 2022, Computers in Biology and Medicine.

Mining transcriptome data to identify genes and pathways related to lemon taste using supervised and unsupervised data learning methods

S. Sazegari, A. Tahmasebi, Z. Zinati, 2021, Horticulture, Environment, and Biotechnology.

Prepubertal exposure to a high dose of cadmium induces hypothalamic injury through transcriptome profiling alteration and neuronal degeneration in female rats.

E. Ebrahimie, S. Saedi, A. Niazi, 2021, Chemico-biological interactions.

Tissue-specific transcriptional biomarkers in medicinal plants: Application of large-scale meta-analysis and computational systems biology.

M. Ebrahimi, E. Ebrahimie, A. Tahmasebi, 2019, Gene.

Dynamic transcriptomic analysis uncovers key genes and mechanisms involved in seed priming-induced tolerance to drought in barley

S. Sazegari, A. Tahmasebi, Z. Zinati, 2020 .

Lead, copper, zinc and aluminum tolerance in contrasting ecotypes of Scrophularia striata

A. Karami, A. Tahmasebi, S. S. Mousavi, 2022, Acta Ecologica Sinica.

Genome-Wide Analysis of Alternative Splicing in Zea mays during Maize Iranian Mosaic Virus Infection

R. Dietzgen, K. Izadpanah, A. Afsharifar, 2019, Plant Molecular Biology Reporter.

Transcriptome Meta-Analysis Identifies Candidate Hub Genes and Pathways of Pathogen Stress Responses in Arabidopsis thaliana

P. Poczai, B. Albrectsen, A. Afsharifar, 2022, Biology.

MicroRNA miR1118 contributes to wheat (Triticum aestivum L.) salinity tolerance by regulating the Plasma Membrane Intrinsic Proteins1;5 (PIP1;5) gene.

A. Tahmasebi, Roohollah Shamloo-Dashtpagerdi, javad nooripour sisakht, 2022, Journal of plant physiology.

Characterization of maize miRNAs responsive to maize Iranian mosaic virus infection

R. Dietzgen, K. Izadpanah, A. Afsharifar, 2022, 3 Biotech.

Genome-wide post-transcriptional regulation of bovine mammary gland response to Streptococcus uberis

S. Sharifi, A. Pakdel, M. Bakhtiarizadeh, 2022, Journal of Applied Genetics.

Integration of transcriptomic and metabolomic analyses to provide insights into response mechanisms to nitrogen and phosphorus deficiencies in soybean.

E. Ebrahimie, S. Kopriva, Anna Koprivova, 2022, Plant science : an international journal of experimental plant biology.

Leaf Water Relationships and Canopy Temperature as Criteria to Distinguish Maize Hybrids under Drought Stress

A. Maleki, V. Mozafari, A. Tahmasebi, 2014 .

Determining the structural amino acid attributes which are important in both protein thermostability and alkalophilicity: a case study on xylanase

Mansour Ebrahimi, Esmaeil Ebrahimie, Ahmad Tahmasebi, 2014 .

Morphological and Molecular Characterization of Iranian Wild Blackberry Species Using Multivariate Statistical Analysis and Inter-Simple Sequence Repeats (ISSR) Markers

S. Eshghi, A. Tahmasebi, A. Gharaghani, 2021 .

Genome-wide analysis of cytosolic and chloroplastic isoforms of glutathione reductase in plant cells

M. Ebrahimi, E. Ebrahimie, F. Aram, 2012 .

Integration of meta-analysis, machine learning and systems biology approach for investigating the transcriptomic response to drought stress in Populus species

A. Niazi, A. Tahmasebi, Sahar Akrami, 2023, Scientific Reports.

Construction of a lncRNA-miRNA-mRNA network to determine the key regulators of the Th1/Th2 imbalance in multiple sclerosis.

A. Nikpoor, N. Sanadgol, M. Shekari, 2021, Epigenomics.

New insights into the evolution of SPX gene family from algae to legumes; a focus on soybean

E. Ebrahimie, S. Kopriva, A. Niazi, 2021, bioRxiv.

Meta-Analysis of Common and Differential Transcriptomic Responses to Biotic and Abiotic Stresses in Arabidopsis thaliana

P. Poczai, A. Afsharifar, A. Tahmasebi, 2022, Plants.

Comparative Genomic Analysis of Quantitative Trait Loci Associated With Micronutrient Contents, Grain Quality, and Agronomic Traits in Wheat (Triticum aestivum L.)

C. Richards, B. Heidari, Nikwan Shariatipour, 2021, Frontiers in Plant Science.

Integrative meta-analysis of transcriptomic responses to abiotic stress in cotton.

E. Ebrahimie, S. Mazloomi, A. Tahmasebi, 2019, Progress in biophysics and molecular biology.

Integrative systems biology analysis of barley transcriptome ─ hormonal signaling against biotic stress

Z. Soltani, A. Niazi, A. Moghadam, 2021, bioRxiv.

Identification of key genes associated with secondary metabolites biosynthesis by system network analysis in Valeriana officinalis

M. Bolhassani, A. Niazi, A. Moghadam, 2021, Journal of Plant Research.

System network analysis of Rosmarinus officinalis transcriptome and metabolome—Key genes in biosynthesis of secondary metabolites

M. S. Taghizadeh, A. Moghadam, A. Tahmasebi, 2023, PloS one.

Nitrogen and phosphorus deficiencies alter primary and secondary metabolites of soybean roots

E. Ebrahimie, S. Kopriva, Anna Koprivova, 2022, bioRxiv.

EFFECTS OF SALINITY STRESS ON PHYSIOLOGICAL PERFORMANCE OF VARIOUS WHEAT AND BARLEY CULTIVARS

Y. Emam, M. Pessarakli, A. Tahmasebi, 2014 .

A comprehensive meta-analysis to identify transcriptional signatures of abiotic stress responses in barley (Hordeum vulgare)

S. Sazegari, A. Tahmasebi, Z. Zinati, 2020, Cereal Research Communications.

Insights from the Echinacea purpurea (L.) Moench transcriptome: Global reprogramming of gene expression patterns towards activation of secondary metabolism pathways

M. Ebrahimi, E. Ebrahimie, A. Tahmasebi, 2019, Industrial Crops and Products.

Identification of key genes involved in secondary metabolite biosynthesis in Digitalis purpurea

A. Niazi, A. Moghadam, A. Tahmasebi, 2023, PloS one.

LncRNA‐miRNA network analysis across the Th17 cell line reveals biomarker potency of lncRNA NEAT1 and KCNQ1OT1 in multiple sclerosis

A. Nikpoor, N. Sanadgol, M. Shekari, 2022, Journal of cellular and molecular medicine.

Integrating expression data and genomic sequences to investigate transcriptional regulation in barley in response to abiotic stress

S. Sazegari, A. Tahmasebi, Z. Zinati, 2021, Biotechnologia.

Comparison of Transcriptional Response of C3 and C4 Plants to Drought Stress Using Meta-Analysis and Systems Biology Approach

A. Niazi, A. Tahmasebi, 2021, Frontiers in Plant Science.

Understanding the Underlying Mechanism of HA-Subtyping in the Level of Physic-Chemical Characteristics of Protein

David L. Adelson, Mansour Ebrahimi, Esmaeil Ebrahimie, 2014, PloS one.

Integration of mRNA and protein expression data for the identification of potential biomarkers associated with pancreatic ductal adenocarcinoma

A. Niazi, A. Moghadam, A. Tahmasebi, 2023, Comput. Biol. Medicine.

Interplay between SARS‐CoV‐2‐derived miRNAs, immune system, vitamin D pathway and respiratory system

E. Karimi, A. Tahmasebi, P. Mousavi, 2021, Journal of cellular and molecular medicine.

Construction of lncRNA/Pseudogene-miRNA Network Based on In Silico Approaches for Glycolysis Pathway to Identify Prostate Adenocarcinoma-Related Potential Biomarkers.

A. Tahmasebi, P. Mousavi, Marjan Khorsand, 2023, Applied Biochemistry and Biotechnology.

Correction: Understanding the Underlying Mechanism of HA-Subtyping in the Level of Physic-Chemical Characteristics of Protein

D. Adelson, M. Ebrahimi, E. Ebrahimie, 2014, PLoS ONE.

Integrative systems biology analysis of barley transcriptome ─ hormonal signaling against biotic stress

Z. Soltani, A. Niazi, A. Moghadam, 2023, PloS one.

New insights into the evolution of SPX gene family from algae to legumes; a focus on soybean

E. Ebrahimie, S. Kopriva, S. Eshghi, 2021, BMC Genomics.

Global Analysis of Gene Expression and Identification of Modules in Echinacea purpurea Using Systems Biology Approach

E. Ebrahimie, A. Niazi, F. Aram, 2018 .

Methyl jasmonate treatment reveals novel insights into lncRNA-mediated regulation of secondary metabolite biosynthesis pathways in Echinacea purpurea

E. Ebrahimie, M. S. Taghizadeh, A. Tahmasebi, 2023, Food Bioscience.