M. Odaka

发表

Ligand-binding enhances the affinity of dimerization of the extracellular domain of the epidermal growth factor receptor.

I. Lax, J. Schlessinger, D. Kohda, 1997, Journal of biochemistry.

Post‐translational modification is essential for catalytic activity of nitrile hydratase

M. Yohda, I. Endo, H. Nakayama, 2000, Protein science : a publication of the Protein Society.

An enzyme controlled by light: the molecular mechanism of photoreactivity in nitrile hydratase.

M. Yohda, I. Endo, M. Odaka, 1999, Trends in biotechnology.

Structure of the Photoreactive Iron Center of the Nitrile Hydratase from Rhodococcus sp. N-771

M. Yohda, I. Endo, N. Dohmae, 1997, The Journal of Biological Chemistry.

K+ is an indispensable cofactor for GrpE stimulation of ATPase activity of DnaK·DnaJ complex from Thermus thermophilus

Masasuke Yoshida, M. Yohda, K. Motohashi, 1997, FEBS letters.

Sulfur K-edge XAS and DFT calculations on nitrile hydratase: geometric and electronic structure of the non-heme iron active site.

K. Hodgson, M. Maeda, A. Dey, 2006, Journal of the American Chemical Society.

Successful PEGylation of hollow encapsulin nanoparticles from Rhodococcus erythropolis N771 without affecting their disassembly and reassembly properties.

K. Noguchi, M. Yohda, Y. Murakami, 2017, Biomaterials science.

Improvement of enantioselectivity of the B-type halohydrin hydrogen-halide-lyase from Corynebacterium sp. N-1074.

K. Noguchi, M. Yohda, A. Ohtaki, 2016, Journal of bioscience and bioengineering.

Comparative proteomic analysis of glomerular proteins in primary and bucillamine-induced membranous nephropathy

Takehiro Suzuki, N. Dohmae, A. Komatsuda, 2021, Clinical proteomics.

Comparison of measurements of anti-PLA2R antibodies in Japanese patients with membranous nephropathy using in-house and commercial ELISA

N. Takahashi, A. Komatsuda, S. Yokota, 2019, Clinical and Experimental Nephrology.

Catalytic Mechanism of Nitrile Hydratase Subsequent to Cyclic Intermediate Formation: A QM/MM Study.

M. Yohda, Y. Shigeta, M. Shoji, 2016, The journal of physical chemistry. B.

Cobalt‐substituted Fe‐type nitrile hydratase of Rhodococcus sp. N‐771

M. Yohda, I. Endo, H. Nakayama, 2000, FEBS letters.

Fe-type nitrile hydratase.

M. Yohda, I. Endo, M. Nakasako, 2001, Journal of inorganic biochemistry.

Tertiary and quaternary structures of photoreactive Fe-type nitrile hydratase from Rhodococcus sp. N-771: roles of hydration water molecules in stabilizing the structures and the structural origin of the substrate specificity of the enzyme.

M. Yohda, I. Endo, N. Kamiya, 1999, Biochemistry.

Arginine 56 mutation in the beta subunit of nitrile hydratase: importance of hydrogen bonding to the non-heme iron center.

M. Yohda, I. Endo, S. Piersma, 2000, Journal of inorganic biochemistry.

Structural and functional characterization of homo-oligomeric complexes of alpha and beta chaperonin subunits from the hyperthermophilic archaeum Thermococcus strain KS-1.

Y. Kagawa, M. Yohda, I. Endo, 1997, Journal of molecular biology.

Mutational Study on αGln90 of Fe-Type Nitrile Hydratase from Rhodococcus sp. N771

Mizuo Maeda, Masafumi Yohda, Nobuo Kamiya, 2006, Bioscience, biotechnology, and biochemistry.

Spectroscopic and computational studies of nitrile hydratase: insights into geometric and electronic structure and the mechanism of amide synthesis

E. Solomon, M. Odaka, Kenneth M. Light, 2015, Chemical science.

Catalytic Mechanism of Nitrile Hydratase Proposed by Time-resolved X-ray Crystallography Using a Novel Substrate, tert-Butylisonitrile*

M. Yohda, T. Noguchi, Hiroyuki Suzuki, 2008, Journal of Biological Chemistry.

A novel inhibitor for Fe-type nitrile hydratase: 2-cyano-2-propyl hydroperoxide.

M. Maeda, S. Yoshida, I. Endo, 2003, Journal of the American Chemical Society.

Functional expression of nitrile hydratase in Escherichia coli: requirement of a nitrile hydratase activator and post-translational modification of a ligand cysteine.

M. Yohda, I. Endo, N. Dohmae, 1999, Journal of biochemistry.

Activity Regulation of Photoreactive Nitrile Hydratase by Nitric Oxide

M. Yohda, Teruyuki Nagamune, I. Endo, 1997 .

Resonance Raman evidence that photodissociation of nitric oxide from the non-heme iron center activates nitrile hydratase from Rhodococcus sp. N-771.

I. Endo, Y. Inoue, T. Noguchi, 1996, Biochemistry.

Photoreactive Nitrile Hydratase: The Photoreaction Site Is Located on the α Subunit

M. Yohda, I. Endo, S. Nagashima, 1996 .

Novel catalytic activity of nitrile hydratase from Rhodococcus sp. N771.

M. Maeda, M. Yohda, N. Dohmae, 2008, Journal of bioscience and bioengineering.

Studies on photoreactive enzyme-nitrile hydratase

I. Endo, M. Odaka, 2002 .

What evidences were elucidated about photoreactive nitrile hydratase

I. Endo, M. Odaka, 2000 .

Novel non-heme iron center of nitrile hydratase with a claw setting of oxygen atoms

Isao Endo, Masafumi Yohda, Nobuo Kamiya, 1998, Nature Structural Biology.

Time-Resolved Crystallography of the Reaction Intermediate of Nitrile Hydratase: Revealing a Role for the Cysteinesulfenic Acid Ligand as a Catalytic Nucleophile.

K. Noguchi, M. Yohda, H. Nakayama, 2015, Angewandte Chemie.

Functional expression of thiocyanate hydrolase is promoted by its activator protein, P15K

M. Maeda, M. Yohda, H. Nakayama, 2006, FEBS letters.

In Situ Observation of Gas Adsorption onto ZIF-8 Using Terahertz Waves

T. Tanno, N. Ogawa, H. Matsumura, 2017 .

A single mutation at the catalytic site of TF1‐α3β3γ complex switches the kinetics of ATP hydrolysis from negative to positive cooperativity

Masasuke Yoshida, E. Muneyuki, M. Odaka, 1997 .

Single site hydrolysis of 2',3'-O-(2,4,6-trinitrophenyl)-ATP by the F1-ATPase from thermophilic bacterium PS3 is accelerated by the chase-addition of excess ATP.

E. Muneyuki, K. Yokoyama, M. Yoshida, 1992, The Journal of biological chemistry.

A 40-kDa epidermal growth factor/transforming growth factor alpha-binding domain produced by limited proteolysis of the extracellular domain of the epidermal growth factor receptor.

H. Kawasaki, K. Suzuki, A. Ullrich, 1993, The Journal of biological chemistry.

Expression, purification, crystallization and preliminary crystallographic analysis of hepatitis B virus core protein dimerized via a peptide linker containing an EGFP insertion.

K. Noguchi, M. Yohda, S. Iwabuchi, 2013, Acta crystallographica. Section F, Structural biology and crystallization communications.

Packaging guest proteins into the encapsulin nanocompartment from Rhodococcus erythropolis N771

K. Noguchi, M. Yohda, Motoko Fujii, 2015, Biotechnology and bioengineering.

In vivo affinity label of a protein expressed in Escherichia coli

M. Yoshida, W. Allison, M. Odaka, 1993, FEBS letters.

Location of the non-heme iron center on the alpha subunit of photoreactive nitrile hydratase from Rhodococcus sp. N-771.

M. Yohda, I. Endo, Y. Inoue, 1996, Biochemical and biophysical research communications.

Thiocyanate hydrolase is a cobalt-containing metalloenzyme with a cysteine-sulfinic acid ligand.

M. Yohda, H. Nakayama, K. Takio, 2006, Journal of the American Chemical Society.

Crystal structure and functional studies of an unusual L-cysteine desulfurase from Archaeoglobus fulgidus.

J. Fontecilla-Camps, D. Dean, J. S. de Oliveira, 2012, Dalton transactions.

Structure of thiocyanate hydrolase: a new nitrile hydratase family protein with a novel five-coordinate cobalt(III) center.

M. Yohda, N. Kamiya, T. Arakawa, 2007, Journal of molecular biology.

Structural and functional characterization of aspartate racemase from the acidothermophilic archaeon Picrophilus torridus

K. Noguchi, M. Yohda, H. Homma, 2016, Extremophiles.

Comparative proteomic analysis of renal proteins from IgA nephropathy model mice and control mice

Takehiro Suzuki, N. Dohmae, N. Takahashi, 2020, Clinical and Experimental Nephrology.

Disulfide Bond Structure of Human Epidermal Growth Factor Receptor*

I. Lax, J. Schlessinger, D. Kohda, 1998, The Journal of Biological Chemistry.

[Epidermal growth factor receptor].

I. Bahar, C. Camacho, M. Cascio, 1994, Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme.

Structure and molecular dynamics simulation of archaeal prefoldin: the molecular mechanism for binding and recognition of nonnative substrate proteins.

K. Noguchi, M. Yohda, K. Miki, 2008, Journal of molecular biology.

Solution structure of the SH3 domain of phospholipase C-γ

J. Schlessinger, D. Kohda, V. Mandiyan, 1993, Cell.

Kinetic and structural studies on roles of the serine ligand and a strictly conserved tyrosine residue in nitrile hydratase

K. Noguchi, M. Yohda, A. Ohtaki, 2010, JBIC Journal of Biological Inorganic Chemistry.

Structural basis for catalytic activation of thiocyanate hydrolase involving metal-ligated cysteine modification.

M. Yohda, H. Nakayama, N. Dohmae, 2009, Journal of the American Chemical Society.

Trigger Factor from Thermus thermophilus Is a Zn2+-dependent Chaperone*

H. Taguchi, Masasuke Yoshida, R. Masui, 2004, Journal of Biological Chemistry.

ATP Binding Is Critical for the Conformational Change from an Open to Closed State in Archaeal Group II Chaperonin*

Masafumi Yohda, Kunio Miki, Ryo Iizuka, 2003, Journal of Biological Chemistry.

Carbonyl sulfide hydrolase from Thiobacillus thioparus strain THI115 is one of the β-carbonic anhydrase family enzymes.

K. Noguchi, M. Yohda, H. Nakayama, 2013, Journal of the American Chemical Society.

Crystal Structures of the Lumazine Protein from Photobacterium kishitanii in Complexes with the Authentic Chromophore, 6,7-Dimethyl- 8-(1′-d-Ribityl) Lumazine, and Its Analogues, Riboflavin and Flavin Mononucleotide, at High Resolution

K. Noguchi, H. Miyatake, M. Yohda, 2009, Journal of bacteriology.

Properties and Crystal Structure of Methylenetetrahydrofolate Reductase from Thermus thermophilus HB8

K. Noguchi, M. Yohda, A. Ohtaki, 2011, PloS one.

Crystal structures of halohydrin hydrogen‐halide‐lyases from Corynebacterium sp. N‐1074

K. Noguchi, M. Yohda, A. Ohtaki, 2015, Proteins.

Comparative proteomic analysis of glomerular proteins in IgA nephropathy and IgA vasculitis with nephritis

Takehiro Suzuki, N. Dohmae, A. Komatsuda, 2023, Clinical Proteomics.

Motif CXCC in nitrile hydratase activator is critical for NHase biogenesis in vivo

M. Maeda, I. Endo, Yujuan Zheng, 2003, FEBS letters.

Structure of aspartate racemase complexed with a dual substrate analogue, citric acid, and implications for the reaction mechanism

M. Yohda, R. Iizuka, A. Ohtaki, 2008, Proteins.

Two arginine residues in the substrate pocket predominantly control the substrate selectivity of thiocyanate hydrolase.

K. Noguchi, M. Yohda, A. Ohtaki, 2013, Journal of bioscience and bioengineering.

Molecular dissection of the beta subunit of F1-ATPase into peptide fragments.

T. Date, M. Yoshida, M. Odaka, 1992, The Journal of biological chemistry.

SOLUTION STRUCTURE OF THE SH3 DOMAIN OF PHOSPHOLIPASE CGAMMA

D. Kohda, F. Inagaki, H. Hatanaka, 1994 .

Expression, purification, crystallization and preliminary X-ray crystallographic studies of hepatitis B virus core fusion protein corresponding to octahedral particles.

K. Noguchi, M. Yohda, S. Iwabuchi, 2013, Acta crystallographica. Section F, Structural biology and crystallization communications.

HSP60 possesses a GTPase activity and mediates protein folding with HSP10

H. Itoh, Kazuya Matsumoto, Hiroshi Yamamoto, 2017, Scientific Reports.

Molecular cloning, expression, and characterization of chaperonin-60 and chaperonin-10 from a thermophilic bacterium, Thermus thermophilus HB8.

H. Taguchi, M. Yohda, I. Endo, 1995, Journal of biochemistry.

Multiple Myeloma–Associated Ig Light Chain Crystalline Cast Nephropathy

K. Noguchi, M. Yohda, N. Takahashi, 2020, Kidney international reports.

Protonation structures of Cys-sulfinic and Cys-sulfenic acids in the photosensitive nitrile hydratase revealed by Fourier transform infrared spectroscopy.

N. Kamiya, T. Noguchi, M. Nojiri, 2003, Biochemistry.

Carbonyl sulfide hydrolase from Thiobacillus thioparus strain THI115 is one of the β-carbonic anhydrase family enzymes.

K. Noguchi, M. Yohda, H. Nakayama, 2013, Journal of the American Chemical Society.

AT(D)PMg‐induced dissociation of the α3β3 complex of the F1‐ATPase from a thermophilic Bacillus PS3 into α1β1 heterodimers is prevented by mutation β(Y341C)

Masasuke Yoshida, T. Hisabori, M. Odaka, 1993 .

Aromatic rings of tyrosine residues at adenine nucleotide binding sites of the beta subunits of F1-ATPase are not necessary for ATPase activity.

E. Muneyuki, M. Yoshida, M. Odaka, 1990, Biochemical and biophysical research communications.