Anton Korobeynikov

发表

Assembling short reads from jumping libraries with large insert sizes

Andrey D. Prjibelski, Pavel A. Pevzner, Alexey A. Gurevich, 2015, Bioinform..

MetaRiPPquest: A Peptidogenomics Approach for the Discovery of Ribosomally Synthesized and Post-translationally Modified Peptides

Pavel A. Pevzner, Rob Knight, Pieter C. Dorrestein, 2017, bioRxiv.

SPAligner: alignment of long diverged molecular sequences to assembly graphs

Dmitry Antipov, Anton Korobeynikov, Tatiana Dvorkina, 2020, BMC Bioinformatics.

Consistency of Parametric MLE Under Mixed Case Interval Censoring

Anton Korobeynikov, A. Korobeynikov, 2012, Commun. Stat. Simul. Comput..

Third international conference “Bioinformatics: from Algorithms to Applications” (BiATA 2019)

Dmitry Antipov, Sergey, Anton Korobeynikov, 2019, BMC Bioinformatics.

Computation- and Space-Efficient Implementation of SSA pdf

Anton Korobeynikov, A. Korobeynikov, 2009, ArXiv.

PathRacer: Racing Profile HMM Paths on Assembly Graph

Anton Korobeynikov, Alexander Shlemov, 2019, AlCoB.

Multivariate and 2D Extensions of Singular Spectrum Analysis with the Rssa Package

Nina Golyandina, Anton Korobeynikov, Konstantin Usevich, 2013, 1309.5050.

MetaMiner: A Scalable Peptidogenomics Approach for Discovery of Ribosomal Peptide Natural Products with Blind Modifications from Microbial Communities.

Hosein Mohimani, Rob Knight, Pavel A Pevzner, 2019, Cell systems.

SSA Analysis of One-Dimensional Time Series

Anatoly Zhigljavsky, Nina Golyandina, Anton Korobeynikov, 2018 .

Basic Singular Spectrum Analysis and forecasting with R

Nina Golyandina, Anton Korobeynikov, N. Golyandina, 2012, Comput. Stat. Data Anal..

ExSPAnder: a universal repeat resolver for DNA fragment assembly

Alla Lapidus, Andrey D. Prjibelski, Pavel A. Pevzner, 2014, Bioinform..

CDSnake: Snakemake pipeline for retrieval of annotated OTUs from paired-end reads using CD-HIT utilities

Alla Lapidus, Anton Korobeynikov, Yulia Kondratenko, 2020, BMC Bioinformatics.

PathRacer: racing profile HMM paths on assembly graph

Anton Korobeynikov, Alexander Shlemov, A. Korobeynikov, 2019, bioRxiv.

SPAligner: alignment of long diverged molecular sequences to assembly graphs

Dmitry Antipov, Anton Korobeynikov, Sergey Nurk, 2019, BMC Bioinformatics.

Assembling Single-Cell Genomes and Mini-Metagenomes From Chimeric MDA Products

Dmitry Antipov, Alla Lapidus, Andrey D. Prjibelski, 2013, J. Comput. Biol..

Assessing the Significance of Peptide Spectrum Match Scores

Anton Korobeynikov, Anastasiia Abramova, 2017, WABI.

Using SPAdes De Novo Assembler

Dmitry Antipov, Alla Lapidus, Anton Korobeynikov, 2020, Current protocols in bioinformatics.

Assembling Genomes and Mini-metagenomes from Highly Chimeric Reads

Dmitry Antipov, Alla Lapidus, Pavel A. Pevzner, 2013, RECOMB.

BayesHammer: Bayesian clustering for error correction in single-cell sequencing

Sergey I. Nikolenko, Max A. Alekseyev, Anton Korobeynikov, 2012, BMC Genomics.

IonHammer: Homopolymer-Space Hamming Clustering for IonTorrent Read Error Correction

Alla Lapidus, Anton Korobeynikov, Vasily Ershov, 2019, J. Comput. Biol..

hybridSPAdes: an algorithm for hybrid assembly of short and long reads

Dmitry Antipov, Pavel A. Pevzner, Anton Korobeynikov, 2016, Bioinform..

Dereplication of microbial metabolites through database search of mass spectra

Liu Cao, Hosein Mohimani, Pavel A Pevzner, 2018, Nature Communications.

Improving Switch Lowering for The LLVM Compiler System

Anton Korobeynikov, 2007 .

BiosyntheticSPAdes: reconstructing biosynthetic gene clusters from assembly graphs

Hosein Mohimani, Pavel A Pevzner, Iman Hajirasouliha, 2019, Genome research.

Increased diversity of peptidic natural products revealed by modification-tolerant database search of mass spectra

Hosein Mohimani, Pavel A Pevzner, Anton Korobeynikov, 2018, Nature Microbiology.