Davide Heller

发表

Chromosome-scale, haplotype-resolved assembly of human genomes

Tobias Marschall, Andrew Carroll, Justin M Zook, 2020, Nature biotechnology.

The mole genome reveals regulatory rearrangements associated with adaptive intersexuality

A. Meyer, A. Visel, S. Mundlos, 2020, Science.

Integration of Hi-C with short and long-read genome sequencing reveals the structure of germline rearranged genomes

D. Horn, S. Mundlos, M. Spielmann, 2022, Nature Communications.

ssHMM: extracting intuitive sequence-structure motifs from high-throughput RNA-binding protein data

Martin Vingron, Ralf Krestel, Annalisa Marsico, 2016, bioRxiv.

Tree reconciliation combined with subsampling improves large scale inference of orthologous group hierarchies

Davide Heller, Damian Szklarczyk, Christian von Mering, 2018, BMC Bioinformatics.

STRING v10: protein–protein interaction networks, integrated over the tree of life

Davide Heller, Damian Szklarczyk, Christian von Mering, 2014, Nucleic Acids Res..

eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses

Davide Heller, Damian Szklarczyk, Christian von Mering, 2018, Nucleic Acids Res..

eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences

Davide Heller, Damian Szklarczyk, Christian von Mering, 2015, Nucleic Acids Res..

Ranbow: A fast and accurate method for polyploid haplotype reconstruction

Martin Vingron, Knut Reinert, M-Hossein Moeinzadeh, 2020, PLoS Comput. Biol..

SVIM: structural variant identification using mapped long reads

Martin Vingron, David Heller, M. Vingron, 2018, bioRxiv.

Genotyping structural variants in pangenome graphs using the vg toolkit

Glenn Hickey, Benedict Paten, Eric T. Dawson, 2019, Genome Biology.

SDip: A novel graph-based approach to haplotype-aware assembly based structural variant calling in targeted segmental duplications sequencing

Martin Vingron, Heng Li, David Heller, 2020, bioRxiv.

SVIM-asm: structural variant detection from haploid and diploid genome assemblies

Martin Vingron, David Heller, M. Vingron, 2020, bioRxiv.

Linear: a framework to enable existing software to resolve structural variants in long reads with flexible and efficient alignment-free statistical models

K. Reinert, Davide Heller, René Rahn, 2023, Briefings Bioinform..

Combined Search in Structured and Unstructured Medical Data

David Heller, Davide Heller, 2014 .

Efficient chromosome-scale haplotype-resolved assembly of human genomes

Andrew Carroll, Xiang Zhou, Jay Ghurye, 2019, bioRxiv.

NMR Constraints Analyser: a web-server for the graphical analysis of NMR experimental constraints

Davide Martin Heller, Alejandro Giorgetti, A. Giorgetti, 2010, Nucleic Acids Res..