Sam Meyer

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Chromosomal organization of transcription: in a nutshell

W. Nasser, S. Reverchon, G. Muskhelishvili, 2018, Current Genetics.

What is a supercoiling-sensitive gene? Insights from topoisomerase I inhibition in the Gram-negative bacterium Dickeya dadantii

F. Hommais, L. Soulère, F. Popowycz, 2021, bioRxiv.

Erratum to: Temperature-induced variation in gene expression burst size in metazoan cells

G. Beslon, O. Gandrillon, Elodie Vallin, 2016, BMC Molecular Biology.

APERO: a genome-wide approach for identifying bacterial small RNAs from RNA-Seq data

F. Hommais, W. Nasser, S. Reverchon, 2019, Nucleic Acids Research.

Development and validation of an HPLC method to quantify 2-Keto-3-deoxy-gluconate (KDG) a major metabolite in pectin and alginate degradation pathways

M. Droux, W. Nasser, S. Reverchon, 2020, bioRxiv.

Coherent Domains of Transcription Coordinate Gene Expression During Bacterial Growth and Adaptation

W. Nasser, S. Reverchon, G. Muskhelishvili, 2019, Microorganisms.

Bacterial genome architecture shapes global transcriptional regulation by DNA supercoiling

Bilal El Houdaigui, T. Hindré, D. Schneider, 2019, bioRxiv.

Mapping the Complex Transcriptional Landscape of the Phytopathogenic Bacterium Dickeya dadantii

F. Hommais, W. Nasser, S. Reverchon, 2020, bioRxiv.

Separation and quantification of 2-Keto-3-deoxy-gluconate (KDG) a major metabolite in pectin and alginate degradation pathways.

M. Droux, W. Nasser, S. Reverchon, 2020, Analytical biochemistry.

Temperature-induced variation in gene expression burst size in metazoan cells

G. Beslon, O. Gandrillon, Elodie Vallin, 2015, BMC Molecular Biology.

Temperature dependence of the DNA double helix at the nanoscale: structure, elasticity, and fluctuations.

R. Lavery, D. Jost, M. Peyrard, 2013, Biophysical journal.

Carbon catabolite repression in pectin digestion by the phytopathogen Dickeya dadantii

M. Droux, W. Nasser, S. Reverchon, 2021, bioRxiv.

The nucleoid-associated protein IHF acts as a ‘transcriptional domainin’ protein coordinating the bacterial virulence traits with global transcription

F. Hommais, W. Nasser, S. Reverchon, 2020, Nucleic acids research.

The nucleoid-associated protein IHF acts as a “domainin” protein coordinating the bacterial virulence traits with global transcription

F. Hommais, W. Nasser, S. Reverchon, 2020, bioRxiv.

DNA Supercoiling: an Ancestral Regulator of Gene Expression in Pathogenic Bacteria?

W. Nasser, S. Reverchon, Sam Meyer, 2019, Computational and structural biotechnology journal.

DNA Physical Properties and Nucleosome Positions Are Major Determinants of HIV-1 Integrase Selectivity

C. Vaillant, Z. Haftek-Terreau, M. S. Benleulmi, 2015, PLoS ONE.

Bacterial promoter opening underpins ubiquitous transcriptional regulation by DNA supercoiling

W. Nasser, S. Reverchon, Sam Meyer, 2020, bioRxiv.

Torsion-Mediated Interaction between Adjacent Genes

Guillaume Beslon, Sam Meyer, G. Beslon, 2014, PLoS Comput. Biol..

Inferring coarse-grain histone-DNA interaction potentials from high-resolution structures of the nucleosome

R. Everaers, Sam Meyer, 2014, Journal of physics. Condensed matter : an Institute of Physics journal.

Protein interaction network analysis reveals growth conditions-specific crosstalk between chromosomal DNA replication and other cellular processes in E. coli

D. Cysewski, M. Glinkowska, Sam Meyer, 2021, bioRxiv.

Role of the Discriminator Sequence in the Supercoiling Sensitivity of Bacterial Promoters

W. Nasser, S. Reverchon, Sam Meyer, 2021, mSystems.

The discriminator sequence is a primary determinant in the supercoiling response of bacterial promoters

W. Nasser, S. Reverchon, Sam Meyer, 2020 .

Emergence of Supercoiling-Mediated Regulatory Networks through Bacterial Chromosome Rearrangements

G. Beslon, Sam Meyer, Théotime Grohens, 2022 .

Quantitative contribution of the spacer length in the supercoiling-sensitivity of bacterial promoters

W. Nasser, S. Reverchon, Sam Meyer, 2022, bioRxiv.

A Genome-Wide Evolutionary Simulation of the Transcription-Supercoiling Coupling

G. Beslon, Sam Meyer, Théotime Grohens, 2022, Artificial Life.

From crystal and NMR structures, footprints and cryo-electron-micrographs to large and soft structures: nanoscale modeling of the nucleosomal stem

J. Bednar, D. Angelov, S. Dimitrov, 2011, Nucleic acids research.

Single-base resolution mapping of H1–nucleosome interactions and 3D organization of the nucleosome

J. Bednar, D. Angelov, S. Dimitrov, 2010, Proceedings of the National Academy of Sciences.

What is a supercoiling-sensitive gene? Insights from topoisomerase I inhibition in the Gram-negative bacterium Dickeya dadantii

F. Hommais, L. Soulère, F. Popowycz, 2021, bioRxiv.

TwisTranscripT: stochastic simulation of the transcription-supercoiling coupling

Sam Meyer, Bilal El Houdaigui, Sam Meyer, 2020, Bioinform..

ThreaDNA: predicting DNA mechanics’ contribution to sequence selectivity of proteins along whole genomes

Jasmin Cevost, Cédric Vaillant, Sam Meyer, 2018, Bioinform..

Temperature-induced variation in gene expression burst size in metazoan cells

G. Beslon, O. Gandrillon, Elodie Vallin, 2015, BMC Molecular Biology.

Quantitative spatial analysis of bacterial transcriptome and chromosome structural data with GRATIOSA: application to twin-supercoiled domain distribution

W. Nasser, S. Reverchon, Sam Meyer, 2023, bioRxiv.

Torsion-Mediated Interaction between Adjacent Genes

G. Beslon, Sam Meyer, 2014, PLoS Comput. Biol..

Emergence of Supercoiling-Mediated Regulatory Networks through the Evolution of Bacterial Chromosome Organization

Sam Meyer, Théotime Grohens, Guillaume Beslon, 2024, bioRxiv.

Emergence of Supercoiling-Mediated Regulatory Networks through Bacterial Chromosome Organization

Sam Meyer, Théotime Grohens, Guillaume Beslon, 2023 .