M. McHugh

发表

Emergence of optrA-mediated linezolid resistance in multiple lineages and plasmids of Enterococcus faecalis revealed by long read sequencing

N. Woodford, K. Hopkins, E. Khatamzas, 2020, bioRxiv.

Epidemic waves of COVID-19 in Scotland: a genomic perspective on the impact of the introduction and relaxation of lockdown on SARS-CoV-2

A. Rambaut, R. Kao, M. Woolhouse, 2021, medRxiv.

Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020

Darren L. Smith, Evelien M. Adriaenssens, Gemma L. Kay, 2020, Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin.

Multicenter Evaluation of the Cepheid Xpert Hepatitis C Virus Viral Load Assay

J. Pawlotsky, A. Wu, S. Chevaliez, 2017, Journal of Clinical Microbiology.

Comparison of Unyvero P55 Pneumonia Cartridge, in-house PCR and culture for the identification of respiratory pathogens and antibiotic resistance in bronchoalveolar lavage fluids in the critical care setting

N. Gadsby, K. Templeton, M. McHugh, 2019, European Journal of Clinical Microbiology & Infectious Diseases.

Comprehensive Molecular Testing for Respiratory Pathogens in Community-Acquired Pneumonia

A. Conway Morris, N. Gadsby, A. Hill, 2016, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

Multicenter Evaluation of QIAstat-Dx Respiratory Panel V2 for Detection of Viral and Bacterial Respiratory Pathogens

W. Melchers, E. Claas, K. Templeton, 2020, Journal of Clinical Microbiology.

Hospital admission and emergency care attendance risk for SARS-CoV-2 delta (B.1.617.2) compared with alpha (B.1.1.7) variants of concern: a cohort study

Joshua B. Singer, Darren L. Smith, Shane A. McCarthy, 2021, The Lancet Infectious Diseases.

Rapid detection of SARS-CoV-2 variants using allele-specific PCR

K. Templeton, M. McHugh, R. Dewar, 2022, Journal of Virological Methods.

The widespread use of topical antimicrobials enriches for resistance in Staphylococcus aureus isolated from patients with atopic dermatitis†

J. Parkhill, C. Proby, A. Irvine, 2018, The British journal of dermatology.

The widespread use of topical antimicrobials enriches for resistance in Staphylococcus aureus isolated from Atopic Dermatitis patients

J. Parkhill, C. Proby, A. Irvine, 2018 .

Underestimation of Staphylococcus aureus (MRSA and MSSA) carriage associated with standard culturing techniques

T. Walsh, D. Guerendiain, S. Tsang, 2018, Bone & joint research.

oNe ThIrd of carrIerS mISSed

T. Walsh, D. Guerendiain, S. Tsang, 2017 .

Development of two real-time multiplex PCR assays for the detection and quantification of eight key bacterial pathogens in lower respiratory tract infections

A. Conway Morris, N. Gadsby, A. Hill, 2015, Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.

SARS-CoV-2 Omicron is an immune escape variant with an altered cell entry pathway

William T. Harvey, Scott M Elliott, Robert M. Davies, 2022, Nature Microbiology.

Presence of optrA-mediated linezolid resistance in multiple lineages and plasmids of Enterococcus faecalis revealed by long read sequencing

N. Woodford, K. Hopkins, E. Khatamzas, 2022, Microbiology.

Bacterial and fungal communities in tracheal aspirates of intubated COVID-19 patients: a pilot study

Wouter A. A. de Steenhuijsen Piters, D. Bogaert, K. Templeton, 2022, Scientific Reports.

Development of an amplicon-based sequencing approach in response to the global emergence of human monkeypox virus

D. Sobral, P. Hemarajata, J. Sevinsky, 2022, medRxiv.

Consideration of within-patient diversity highlights transmission pathways and antimicrobial resistance gene variability in vancomycin resistant Enterococcus faecium

S. Gillespie, K. Pettigrew, S. Taori, 2022, medRxiv.

Detection of Norovirus by BD MAX™, Xpert® Norovirus, and xTAG® Gastrointestinal Pathogen Panel in stool and vomit samples.

D. Guerendiain, K. Templeton, M. McHugh, 2018, Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology.

Reduced turnaround time and improved diagnosis of invasive serogroup B Neisseria meningitidis and Streptococcus pneumoniae infections using a lyophilized quadruplex quantitative PCR.

S. Gray, E. Kaczmarski, M. Guiver, 2015, Journal of medical microbiology.

Analysis of the ARTIC V4 and V4.1 SARS-CoV-2 primers and their impact on the detection of Omicron BA.1 and BA.2 lineage defining mutations

M. McHugh, G. Fernandes, R. Dewar, 2022, medRxiv.

N. Gadsby, K. Templeton, M. McHugh, 2019, European Journal of Clinical Microbiology & Infectious Diseases.

Evaluation of Staphylococcus aureus eradication therapy in orthopaedic surgery

T. Walsh, S. Lewis, D. Guerendiain, 2018, Journal of medical microbiology.

Exponential growth, high prevalence of SARS-CoV-2, and vaccine effectiveness associated with the Delta variant

Graham W. Taylor, Joshua B. Singer, Darren L. Smith, 2021, Science.

Evaluating the Effects of SARS-CoV-2 Spike Mutation D614G on Transmissibility and Pathogenicity

D. A. Jackson, Graham W. Taylor, William L. Hamilton, 2020, Cell.

Assessing transmissibility of SARS-CoV-2 lineage B.1.1.7 in England

Graham W. Taylor, Joshua B. Singer, Scott M Elliott, 2021, Nature.

SARS-CoV-2 evolution during treatment of chronic infection

Graham W. Taylor, William L. Hamilton, Joshua B. Singer, 2021, Nature.

Genomic epidemiology reveals multiple introductions of SARS-CoV-2 from mainland Europe into Scotland

Joshua B. Singer, A. Rambaut, D. Robertson, 2020, Nature Microbiology.

Recurrent emergence of SARS-CoV-2 spike deletion H69/V70 and its role in the Alpha variant B.1.1.7

William T. Harvey, Graham W. Taylor, William L. Hamilton, 2021, Cell Reports.

Genomic epidemiology of SARS-CoV-2 in a university outbreak setting and implications for public health planning

William T. Harvey, Scott M Elliott, Kevin R. Cole, 2022, Scientific Reports.

Genomic epidemiology of SARS-CoV-2 in a UK university identifies dynamics of transmission

Graham W. Taylor, Scott M Elliott, Jaime M. Tovar-Corona, 2022, Nature Communications.

Genomic reconstruction of the SARS-CoV-2 epidemic in England

William T. Harvey, William L. Hamilton, Richard J. Goater, 2021, Nature.

SARS-CoV-2 evolution during treatment of chronic infection

Graham W. Taylor, William L. Hamilton, Joshua B. Singer, 2021, Nature.

Development of an amplicon-based sequencing approach in response to the global emergence of human monkeypox virus

D. Sobral, P. Hemarajata, J. Sevinsky, 2023, medRxiv.

Genomics-informed outbreak investigations of SARS-CoV-2 using civet

N. Loman, A. Rambaut, D. Aanensen, 2021, medRxiv.

Defining the analytical and clinical sensitivity of the ARTIC method for the detection of SARS-CoV-2

Andrew J. Page, Gemma L. Kay, J. O’Grady, 2021, medRxiv.

Author Correction: Genomic epidemiology reveals multiple introductions of SARS-CoV-2 from mainland Europe into Scotland

A. Rambaut, D. Robertson, J. Hughes, 2020, Nature Microbiology.

Investigation of hospital discharge cases and SARS-CoV-2 introduction into Lothian care homes

William T. Harvey, Scott M Elliott, Kevin R. Cole, 2023, Journal of Hospital Infection.

Evaluation of the molecular detection of ciprofloxacin resistance in Neisseria gonorrhoeae by the ResistancePlus GC assay (SpeeDx).

K. Templeton, J. Shepherd, M. McHugh, 2020, Diagnostic microbiology and infectious disease.

Rapid molecular testing for Staphylococcus aureus bacteraemia improves clinical management.

B. Parcell, F. Mackenzie, K. Templeton, 2020, Journal of medical microbiology.

Publisher Correction: SARS-CoV-2 Omicron is an immune escape variant with an altered cell entry pathway

William T. Harvey, Scott M Elliott, Robert M. Davies, 2022, Nature Microbiology.

The SARS-CoV-2 Alpha variant was associated with increased clinical severity of COVID-19 in Scotland: A genomics-based retrospective cohort analysis

J. Haughney, J. Hughes, B. Parcell, 2023, PloS one.

Inconsistent directions of change in case severity across successive SARS-CoV-2 variant waves suggests an unpredictable future

R. Forrest, J. Haughney, E. Goldstein, 2022, medRxiv.

The SARS-CoV-2 Alpha variant is associated with increased clinical severity of disease

J. Haughney, J. Hughes, S. Clifford, 2021, medRxiv.

Sensitivity of SARS-CoV-2 B.1.1.7 to mRNA vaccine-elicited antibodies

Graham W. Taylor, William L. Hamilton, Joshua B. Singer, 2021, Nature.

Directions of change in intrinsic case severity across successive SARS-CoV-2 variant waves have been inconsistent

J. Haughney, S. Seaman, J. Hughes, 2023, The Journal of infection.

Development of an amplicon-based sequencing approach in response to the global emergence of mpox

P. Hemarajata, J. Sevinsky, D. Park, 2023, PLoS biology.

Directions of change in intrinsic case severity across successive SARS-CoV-2 variant waves have been inconsistent

J. Haughney, S. Seaman, J. Hughes, 2023, The Journal of infection.

Letter to the Editor in response to Sivakumaran et al., Estimating the contribution of respiratory pathogens to acute exacerbations of COPD using routine data.

D. Musher, M. Rodriguez‐Barradas, N. Gadsby, 2023, Journal of Infection.

UNDERESTIMATION OF STAPHYLOCOCCUS AUREUS CARRIAGE ASSOCIATED WITH STANDARD CULTURING TECHNIQUES

T. Walsh, D. Guerendiain, K. Templeton, 2017 .

Whole Genome Sequencing and Molecular Epidemiology of Clinical Isolates of Staphylococcus aureus from Algeria

M. Sebaihia, M. Holden, M. McHugh, 2023, Microorganisms.

The widespread use of topical antimicrobials enriches for resistance in Staphylococcus aureus isolated from Atopic Dermatitis patients

J. Parkhill, C. Proby, A. Irvine, 2018 .

of Evaluating the effects of SARS-CoV-2 spike mutation D614G on transmissibility and pathogenicity

D. A. Jackson, Graham W. Taylor, William L. Hamilton, 2021 .

Development of two real-time multiplex PCR assays for the detection and quantification of eight key bacterial pathogens in lower respiratory tract infections

N. Gadsby, A. Hill, C. Russell, 2015, Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.

Consideration of within-patient diversity highlights transmission pathways and antimicrobial resistance gene variability in vancomycin-resistant Enterococcus faecium

K. Pettigrew, M. McHugh, K. Templeton, 2024, The Journal of antimicrobial chemotherapy.

COVID-19 due to the B.1.617.2 (Delta) variant compared to B.1.1.7 (Alpha) variant of SARS-CoV-2: a prospective observational cohort study

Scott M Elliott, Kevin R. Cole, Robert M. Davies, 2022, Scientific Reports.