Jenny L. Draper

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Beyond research: a primer for considerations on using viral metagenomics in the field and clinic

Bas E. Dutilh, Richard J. Hall, Fiona G. G. Nielsen, 2015, Front. Microbiol..

Genomic epidemiology and multilevel genome typing of Australian Salmonella enterica serovar Enteritidis

Mark M. Tanaka, V. Sintchenko, S. Octavia, 2022, bioRxiv.

COVID-19 Infection With the Omicron SARS-CoV-2 Variant in a Cohort of Kidney and Kidney Pancreas Transplant Recipients: Clinical Features, Risk Factors, and Outcomes

V. Sintchenko, G. Wong, K. Kable, 2022, Transplantation.

Guiding the design of SARS-CoV-2 genomic surveillance by estimating the resolution of outbreak detection

V. Sintchenko, C. Suster, D. Dwyer, 2022, Frontiers in Public Health.

Genomic Epidemiology and Multilevel Genome Typing of Australian Salmonella enterica Serovar Enteritidis

Mark M. Tanaka, V. Sintchenko, S. Octavia, 2022, bioRxiv.

Metabolic Engineering of Lactococcus lactis to Enhance Biopolymer Bead Production

Jenny L. Draper, A. Jahns, J. Lee, 2012 .

Co-infection with SARS-CoV-2 Omicron and Delta variants revealed by genomic surveillance

E. Holmes, V. Sintchenko, D. Dwyer, 2022, Nature Communications.

Documenting elimination of co-circulating COVID-19 clusters using genomics in New South Wales, Australia

V. Sintchenko, C. Lam, D. Dwyer, 2021, BMC research notes.

Engineering bacteria to manufacture functionalized polyester beads

Jenny L. Draper, B. Rehm, 2012, Bioengineered.

Bondi and beyond. Lessons from three waves of COVID-19 from 2020.

V. Sheppeard, R. Rockett, A. Capon, 2021, Public health research & practice.

Revealing COVID-19 transmission in Australia by SARS-CoV-2 genome sequencing and agent-based modeling

Mikhail Prokopenko, Rosemarie Sadsad, Edward C. Holmes, 2020, Nature Medicine.

Revealing COVID-19 Transmission by SARS-CoV-2 Genome Sequencing and Agent Based Modelling

M. Prokopenko, E. Holmes, T. Sorrell, 2020, bioRxiv.

RESISTANCE CONFERRING MUTATIONS IN SARS-CoV-2 DELTA FOLLOWING SOTROVIMAB INFUSION

V. Sintchenko, D. Dwyer, J. Kok, 2021, medRxiv.

Combining local‐structure, fold‐recognition, and new fold methods for protein structure prediction

Jonathan Casper, Mark Diekhans, Richard Hughey, 2003, Proteins.

Fallacy of the Unique Genome: Sequence Diversity within Single Helicobacter pylori Strains

K. Karplus, J. Underwood, B. Weimer, 2017, mBio.

The Helicobacter pylori CZB Cytoplasmic Chemoreceptor TlpD Forms an Autonomous Polar Chemotaxis Signaling Complex That Mediates a Tactic Response to Oxidative Stress

K. Ottemann, T. Andermann, Susan M. Williams, 2016, Journal of bacteriology.

Identification of a Chemoreceptor Zinc-Binding Domain Common to Cytoplasmic Bacterial Chemoreceptors

K. Karplus, K. Ottemann, J. Draper, 2011, Journal of bacteriology.

Resistance Mutations in SARS-CoV-2 Delta Variant after Sotrovimab Use

V. Sintchenko, D. Dwyer, J. Kok, 2022, The New England journal of medicine.

Tracking the international spread of SARS-CoV-2 lineages B.1.1.7 and B.1.351/501Y-V2 with grinch

Ira W. Deveson, Nikki E. Freed, Nuno R. Faria, 2021, Wellcome open research.

Characterization of mid-intestinal microbiota of farmed Chinook salmon using 16S rRNA gene metabarcoding

D. Waite, Milica Ciric, Jenny L. Draper, 2019, Archives of Biological Sciences.

Characterisation of gut microbiota of farmed Chinook salmon using metabarcoding

D. Waite, Milica Ciric, Jenny L. Draper, 2018, bioRxiv.

Identifying accurate metagenome and amplicon software via a meta-analysis of sequence to taxonomy benchmarking studies

Robert D. Finn, Paul P. Gardner, Xochitl C. Morgan, 2017, bioRxiv.

SAM‐T04: What is new in protein–structure prediction for CASP6

Richard Hughey, Kevin Karplus, Martina Koeva, 2005, Proteins.

Fulminant Bacillus cereus food poisoning with fatal multi-organ failure

P. Ferguson, C. Colaco, Jenny L. Draper, 2021, BMJ Case Reports.

The evolution and international spread of extensively drug resistant Shigella sonnei

F. Weill, V. Sintchenko, J. Iredell, 2023, Nature Communications.

Tracking the international spread of SARS-CoV-2 lineages B.1.1.7 and B.1.351/501Y-V2 with grinch

Nikki E. Freed, Nuno R. Faria, M. Koopmans, 2021, Wellcome open research.

Identification of Source of Brucella suis Infection in Human by Whole-Genome Sequencing, United States and Tonga

B. Leamaster, R. Tiller, S. Robbe-Austerman, 2016, Emerging infectious diseases.

Emergent Omicron BR.2.1 sublineage of SARS-CoV-2 in New South Wales, Australia: a subvariant with high fitness but without increased disease severity

V. Sintchenko, D. Dwyer, J. Kok, 2023, International Journal of Infectious Diseases.

A laboratory framework for ongoing optimisation of amplification based genomic surveillance programs

V. Sintchenko, C. Lam, C. Suster, 2023, bioRxiv.

Genomic Epidemiology and Multilevel Genome Typing of Australian Salmonella enterica Serovar Enteritidis

Mark M. Tanaka, V. Sintchenko, S. Octavia, 2023, Microbiology spectrum.

Comparison of Kernels for Protein Secondary Structure Prediction With a Support Vector Machine ( cmps 242 Final Project

Jenny L. Draper, 2002 .

PROTEINS: Structure, Function, and Bioinformatics Suppl 7:135–142 (2005) SAM-T04: What Is New in Protein–Structure Prediction for

K. Karplus, R. Hughey, M. Koeva, 2022 .

Draft Genome Sequence of a New Zealand Rickettsia-Like Organism Isolated from Farmed Chinook Salmon

A. Mcfadden, Jenny L. Draper, E. Gias, 2016, Genome Announcements.