Lisa Bastarache

发表

A General Purpose Phenotype Algorithm for Venous Thromboembolism Using Billing Codes and Natural Language Processing

Joshua C. Denny, Eugenia R. McPeek Hinz, Lisa Bastarache, 2012, 2012 IEEE Second International Conference on Healthcare Informatics, Imaging and Systems Biology.

R PheWAS: data analysis and plotting tools for phenome-wide association studies in the R environment

Joshua C. Denny, Lisa Bastarache, Robert J. Carroll, 2014, Bioinform..

Improving the phenotype risk score as a scalable approach to identifying patients with Mendelian disease

Lisa Bastarache, Joshua C Denny, Dan M Roden, 2019, J. Am. Medical Informatics Assoc..

Phenome-Wide Association Studies Using NLP-Derived Concepts

Joshua C. Denny, Lisa Bastarache, Peter Speltz, 2014, AMIA.

Computable Longitudinal Patient Trajectories

Lisa Bastarache, Noémie Elhadad, Guergana K. Savova, 2018, AMIA.

Using PheWAS and Natural Language Processing to Discover Clinical Associations for Congenital Chest Deformities

Joshua C. Denny, Lisa Bastarache, Wei-Qi Wei, 2013, AMIA.

Accelerating Precision Drug Development and Drug Repurposing by Leveraging Human Genetics.

Lisa Bastarache, Joshua C Denny, Dan M Roden, 2017, Assay and drug development technologies.

Using PheWAS to Assess Pleiotropy of Genetic Risk Scores for Rheumatoid Arthritis and Coronary Artery Disease in the eMERGE Network

Christopher G. Chute, Lisa Bastarache, Dana C. Crawford, 2012, AMIA.

Sub-Phenotyping of Crohn's Disease Using a Large Electronic Record Cohort

Joshua C. Denny, Lisa Bastarache, Robert J. Carroll, 2017, AMIA.

Tracking medical students' clinical experiences using natural language processing

Joshua C. Denny, Lisa Bastarache, Anderson Spickard, 2009, J. Biomed. Informatics.

Development of a Natural Language Processing System to Identify Timing and Status of Colonoscopy Testing in Electronic Medical Records

Hua Xu, Randolph A. Miller, Joshua C. Denny, 2009, AMIA.

Classifying ICD-9 codes into meaningful disease categories: A comparison between two coding systems

Joshua C. Denny, Lisa Bastarache, Wei-Qi Wei, 2013, AMIA.

Validation and Enhancement of a Computable Medication Indication Resource (MEDI) Using a Large Practice-based Dataset

Joshua C. Denny, Lisa Bastarache, Wei-Qi Wei, 2013, AMIA.

Comparing Diagnoses Recorded in Problem Lists vs. Administrative Codes

Joshua C. Denny, Lisa Bastarache, Wei-Qi Wei, 2012, AMIA.

Association of BMI and Obesity Genetic Risk Score with Surgical Procedures Through a Procedure-wide Association Study

Joshua C. Denny, Lisa Bastarache, Wei-Qi Wei, 2017, AMIA.

Open Source R Implementation of the PheWAS Methodology

Joshua C. Denny, Lisa Bastarache, Robert J. Carroll, 2013, AMIA.

Integrating existing natural language processing tools for medication extraction from discharge summaries

Son Doan, Hua Xu, Joshua C. Denny, 2010, J. Am. Medical Informatics Assoc..

Extracting timing and status descriptors for colonoscopy testing from electronic medical records

Hua Xu, Randolph A. Miller, Joshua C. Denny, 2010, J. Am. Medical Informatics Assoc..

A Natural Language Processing Algorithm to define a Venous Thromboembolism Phenotype

Joshua C. Denny, Eugenia R. McPeek Hinz, Lisa Bastarache, 2013, AMIA.

Development and evaluation of an ensemble resource linking medications to their indications

Hua Xu, Joshua C. Denny, Lisa Bastarache, 2013, J. Am. Medical Informatics Assoc..

Diabetes and Susceptibility to Infection: A Study of Lab Culture Results in the EMR

Joshua C. Denny, Lisa Bastarache, Wei-Qi Wei, 2012, AMIA.

Phenotype risk scores identify patients with unrecognized Mendelian disease patterns

Joshua C. Denny, Lisa Bastarache, Wei-Qi Wei, 2018, Science.

Identifying genetically driven clinical phenotypes using linear mixed models

Lisa Bastarache, Joshua C Denny, Dan M Roden, 2016, Nature Communications.

Mechanistic Phenotypes: An Aggregative Phenotyping Strategy to Identify Disease Mechanisms Using GWAS Data

Gerard Tromp, Yan Guo, Marylyn D. Ritchie, 2013, PloS one.

The phenotypic legacy of admixture between modern humans and Neandertals

Gerard Tromp, Marylyn D. Ritchie, Joshua C. Denny, 2016, Science.

A genome- and phenome-wide association study to identify genetic variants influencing platelet count and volume and their pleiotropic effects

Christopher G. Chute, Marylyn D. Ritchie, Joshua C. Denny, 2013, Human Genetics.

Natural Language Processing Improves Identification of Colorectal Cancer Testing in the Electronic Medical Record

Ming Li, Lisa Bastarache, Joshua C Denny, 2012, Medical decision making : an international journal of the Society for Medical Decision Making.

Case 40-2018: A Woman with Recurrent Sinusitis, Cough, and Bronchiectasis.

Lisa Bastarache, Joshua C Denny, Julie A Bastarache, 2019, The New England journal of medicine.

Genome-and Phenome-Wide Analysis of Cardiac Conduction Identifies Markers of Arrhythmia Risk Running title : Ritchie et al . ; QRS GWAS and PheWAS in electronic records

Christopher G. Chute, Marylyn D. Ritchie, Joshua C. Denny, 2013 .

Phenome-wide scanning identifies multiple diseases and disease severity phenotypes associated with HLA variants

Lisa Bastarache, Joshua C Denny, Dan M Roden, 2017, Science Translational Medicine.

Development of an ensemble resource linking MEDications to their Indications (MEDI).

Lisa Bastarache, Joshua C Denny, Wei-Qi Wei, 2013, AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science.

TYK2 Protein-Coding Variants Protect against Rheumatoid Arthritis and Autoimmunity, with No Evidence of Major Pleiotropic Effects on Non-Autoimmune Complex Traits

Joshua C. Denny, Lisa Bastarache, Jing Cui, 2015, PloS one.

Mapping ICD-10 and ICD-10-CM Codes to Phecodes: Workflow Development and Initial Evaluation

Lisa Bastarache, Joshua C Denny, Wei-Qi Wei, 2019, JMIR Medical Informatics.

PhenomeXcan: Mapping the genome to the phenome through the transcriptome

Milton Pividori, Lisa Bastarache, Xiaoquan Wen, 2019, Science Advances.

Phenome-wide association studies demonstrating pleiotropy of genetic variants within FTO with and without adjustment for body mass index

Suzette J. Bielinski, Gerard Tromp, Christopher G. Chute, 2014, Front. Genet..

Cox regression increases power to detect genotype-phenotype associations in genomic studies using the electronic health record

Qingxia Chen, Joshua C. Denny, Lisa Bastarache, 2019, BMC Genomics.