Ignacio Medina

发表

Multicore and Cloud-Based Solutions for Genomic Variant Analysis

Cristina Y. González, Marta Bleda, Francisco Salavert, 2012, Euro-Par Workshops.

Acceleration of short and long DNA read mapping without loss of accuracy using suffix array

Ignacio Blanquer, Joaquín Dopazo, Ignacio Medina, 2014, Bioinform..

The role of the environment in Parkinson's disease.

Joaquín Dopazo, Ignacio Medina, Joaquín Tárraga, 1996, Nucleic Acids Res..

Prophet, a web-based tool for class prediction using microarray data

Joaquín Dopazo, Ignacio Medina, Joaquín Tárraga, 2007, Bioinform..

Joint annotation of coding and non-coding single nucleotide polymorphisms and mutations in the SNPeffect and PupaSuite databases

Joaquín Dopazo, Ignacio Medina, Joost J. J. van Durme, 2007, Nucleic Acids Res..

HPG pore: an efficient and scalable framework for nanopore sequencing data

Joaquín Dopazo, Ignacio Medina, Joaquín Tárraga, 2016, BMC Bioinformatics.

A framework for genomic sequencing on clusters of multicore and manycore processors

Joaquín Dopazo, Enrique S. Quintana-Ortí, Ignacio Medina, 2018, Int. J. High Perform. Comput. Appl..

Robust Error Correction for De Novo Assembly via Spectral Partitioning and Sequence Alignment

Andrés Tomás, Ignacio Blanquer, Ignacio Medina, 2014, IWBBIO.

Concurrent and Accurate RNA Sequencing on Multicore Platforms pdf

Joaquín Dopazo, Enrique S. Quintana-Ortí, Ignacio Medina, 2013, ArXiv.

Select Your SNPs (SYSNPs): a web tool for automatic and massive selection of SNPs

Joaquín Dopazo, Arcadi Navarro, Ignacio Medina, 2012, Int. J. Data Min. Bioinform..

ISACGH: a web-based environment for the analysis of Array CGH and gene expression which includes functional profiling

Joaquín Dopazo, Ignacio Medina, Joaquín Tárraga, 2007, Nucleic Acids Res..

Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling

Joaquín Dopazo, Ignacio Medina, Stefan Götz, 2010, Nucleic Acids Res..

Assessing the impact of mutations found in next generation sequencing data over human signaling pathways

Rosa D. Hernansaiz-Ballesteros, Francisco Salavert, Joaquín Dopazo, 2015, Nucleic Acids Res..

Using Papers Citations for Selecting the Best Genomic Databases

Oscar Pastor, Ana M. Levin, Joaquín Dopazo, 2011, 2011 30th International Conference of the Chilean Computer Science Society.

Fast inexact mapping using advanced tree exploration on backward search methods

Andrés Tomás, Ignacio Blanquer, Joaquín Dopazo, 2015, BMC Bioinformatics.

VARIANT: Command Line, Web service and Web interface for fast and accurate functional characterization of variants found by Next-Generation Sequencing

Cristina Y. González, Marta Bleda, Francisco Salavert, 2012, Nucleic Acids Res..

Genome Maps, a new generation genome browser

Marta Bleda, Francisco Salavert, Rubén Sánchez, 2013, Nucleic Acids Res..

VISMapper: ultra-fast exhaustive cartography of viral insertion sites for gene therapy

Joaquín Dopazo, Ignacio Medina, Joaquín Tárraga, 2017, BMC Bioinformatics.

Concurrent and Accurate Short Read Mapping on Multicore Processors

Ignacio Medina, Sergio Barrachina, Maribel Castillo, 2015, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Inferring the functional effect of gene expression changes in signaling pathways

Francisco Salavert, Rubén Sánchez, Joaquín Dopazo, 2013, Nucleic Acids Res..

Actionable pathways: interactive discovery of therapeutic targets using signaling pathway models

Francisco Salavert, Joaquín Dopazo, Ignacio Medina, 2016, Nucleic Acids Res..

GEPAS, a web-based tool for microarray data analysis and interpretation

Joaquín Dopazo, Ignacio Medina, Stefan Götz, 2008, Nucleic Acids Res..

MuffinEc: Error correction for de Novo assembly via greedy partitioning and sequence alignment

Andrés Tomás, Ignacio Blanquer, Ignacio Medina, 2016, Inf. Sci..

Serial Expression Analysis: a web tool for the analysis of serial gene expression data

Joaquín Dopazo, Ignacio Medina, Ana Conesa, 2010, Nucleic Acids Res..

A parallel and sensitive software tool for methylation analysis on multicore platforms

José Duato, Joaquín Dopazo, Ignacio Medina, 2015, Bioinform..

Babelomics 5.0: functional interpretation for new generations of genomic data

Rosa D. Hernansaiz-Ballesteros, Marta Bleda, Francisco Salavert, 2015, Nucleic Acids Res..

PyCellBase, an efficient python package for easy retrieval of biological data from heterogeneous sources

Joaquín Dopazo, Ignacio Medina, Pablo Marín-García, 2019, BMC Bioinformatics.

CellBase, a comprehensive collection of RESTful web services for retrieving relevant biological information from heterogeneous sources

Marta Bleda, Francisco Salavert, Joaquín Dopazo, 2012, Nucleic Acids Res..

Inexact Sequence Mapping Study Cases: Hybrid GPU Computing and Memory Demanding Indexes

Andrés Tomás, Ignacio Blanquer, Ignacio Medina, 2014, IWBBIO.

Phylemon: a suite of web tools for molecular evolution, phylogenetics and phylogenomics

Joaquín Dopazo, Ignacio Medina, Joaquín Tárraga, 2007, Nucleic Acids Res..

A web tool for the design and management of panels of genes for targeted enrichment and massive sequencing for clinical applications

Joaquín Dopazo, Ignacio Medina, Francisco García-García, 2014, Nucleic Acids Res..

Scalable RNA Sequencing on Clusters of Multicore Processors

Joaquín Dopazo, Enrique S. Quintana-Ortí, Ignacio Medina, 2015, TrustCom 2015.

Using GPUs for the Exact Alignment of Short-Read Genetic Sequences by Means of the Burrows-Wheeler Transform

Andrés Tomás, Ignacio Blanquer, Joaquín Dopazo, 2012, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Scalable RNA Sequencing on Clusters of Multicore Processors

Enrique S. Quintana-Ortí, Joaquín Dopazo, Ignacio Medina, 2015, 2015 IEEE Trustcom/BigDataSE/ISPA.

Phylemon 2.0: a suite of web-tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing

Rubén Sánchez, Joaquín Dopazo, Ignacio Medina, 2011, Nucleic Acids Res..

Gene set-based analysis of polymorphisms: finding pathways or biological processes associated to traits in genome-wide association studies

Joaquín Dopazo, Ignacio Medina, Joaquín Tárraga, 2009, Nucleic Acids Res..

Design of a Generic Architecture for executing Bioinformatics Workflows on Distributed Infrastructures

Ignacio Blanquer, Cristina Y. González, Ignacio Medina, 2014, IWBBIO.

Inferring the regulatory network behind a gene expression experiment

Marta Bleda, Francisco Salavert, Joaquín Dopazo, 2012, Nucleic Acids Res..

Web-based network analysis and visualization using CellMaps

Joaquín Dopazo, Marta Bleda, Francisco Salavert, 2016, Bioinform..

A web-based interactive framework to assist in the prioritization of disease candidate genes in whole-exome sequencing studies

Francisco Salavert, Joaquín Dopazo, Ignacio Medina, 2014, Nucleic Acids Res..

Babelomics: advanced functional profiling of transcriptomics, proteomics and genomics experiments

Joaquín Dopazo, Ignacio Medina, Stefan Götz, 2008, Nucleic Acids Res..

Four new loci associations discovered by pathway-based and network analyses of the genome-wide variability profile of Hirschsprung’s disease

Joaquín Dopazo, Ignacio Medina, David Montaner, 2012, Orphanet Journal of Rare Diseases.

A map of human microRNA variation uncovers unexpectedly high levels of variability

Joaquín Dopazo, Ignacio Medina, Eva Alloza, 2012, Genome Medicine.

The European Genome-phenome Archive of human data consented for biomedical research

Arcadi Navarro, Ignacio Medina, Thomas Laurent, 2015, Nature Genetics.

Identification of epistatic interactions through genome-wide association studies in sporadic medullary and juvenile papillary thyroid carcinomas

Cristina Y. González, Ignacio Medina, Marta Bleda, 2015, BMC Medical Genomics.