Paul A. Rejto

发表

Abstract A33: Optimizing NGS-based shRNA screening experiments and data analysis

Ying Gao, Jiyang Yu, Wenyang Zhong, 2013 .

Docking Conformationally Flexible Small Molecules into a Protein Binding Site through Evolutionary Programming

David B. Fogel, Lawrence J. Fogel, Gennady Verkhivker, 1995, Evolutionary Programming.

Deciphering common failures in molecular docking of ligand-protein complexes

Gennady Verkhivker, Peter W. Rose, Paul A. Rejto, 2000, J. Comput. Aided Mol. Des..

Detecting somatic mutations with high accuracy in plasma cell-free DNA with TNER2

Shibing Deng, Joy Hsu, Paul A. Rejto, 2019, 2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Knowledge discovery and data mining in pharmaceutical cancer research

Paul A. Rejto, 2011, KDD.

Statistical method on nonrandom clustering with application to somatic mutations in cancer

Jingjing Ye, Paul A. Rejto, Adam Pavlícek, 2010, BMC Bioinformatics.

Cell Index Database (CELLX): A Web Tool for Cancer Precision Medicine

Tao Xie, Kai Wang, Zhou Zhu, 2014, Pacific Symposium on Biocomputing.

Thermodynamics and Kinetics of Ligand-Protein Binding Studied with the Weighted Histogram Analysis Method and Simulated Annealing

Gennady Verkhivker, Peter W. Rose, Paul A. Rejto, 1999, Pacific Symposium on Biocomputing.

New trends in computational structure prediction of ligand-protein complexes for receptor-based drug design

Paul A. Rejto, Daniel K. Gehlhaar, Stephan T. Freer, 1997 .

Outlier analysis of functional genomic profiles enriches for oncology targets and enables precision medicine

Paul A. Rejto, Zhou Zhu, Nathan T. Ihle, 2016, BMC Genomics.

Fully Automated and Rapic Flexible Docking of Inhibitors Covalently Bound to Serine Proteases

Paul A. Rejto, Daniel K. Gehlhaar, Djamal Bouzida, 1998, Evolutionary Programming.

Easy Does It: Reducing Complexity in Ligand-Protein Docking

Paul A. Rejto, Daniel K. Gehlhaar, Djamal Bouzida, 2000 .

Title: Cross-Species Analysis of Genetically Engineered Mouse Models of MAPK Driven

Ping Jiang, Eva Budinská, Owen J. Sansom, 2014 .

TNER: a novel background error suppression method for mutation detection in circulating tumor DNA

Tao Xie, Kai Wang, Shibing Deng, 2018, BMC Bioinformatics.

Parallel simulated tempering dynamics of ligand–protein binding with ensembles of protein conformations

Peter W. Rose, Paul A. Rejto, Daniel K. Gehlhaar, 2001 .

MONTE CARLO STUDY OF LIGAND-PROTEIN BINDING ENERGY LANDSCAPES WITH THE WEIGHTED HISTOGRAM ANALYSIS METHOD

Paul A. Rejto, Djamal Bouzida, Gennady M Verkhivker, 1999 .

Reduced Dimensionality in Ligand—Protein Structure Prediction: Covalent Inhibitors of Serine Proteases and Design of Site-Directed Combinatorial Libraries

Paul A. Rejto, Daniel K. Gehlhaar, Djamal Bouzida, 1999 .

An Integrated Genomic Approach to Identify Predictive Biomarkers of Response to the Aurora Kinase Inhibitor PF-03814735

Paul A. Rejto, Jing Yuan, Keith A. Ching, 2012, Molecular Cancer Therapeutics.

Examining ligand-protein interactions with binding-energy landscapes

Paul A. Rejto, Djamal Bouzida, Gennady M Verkhivker, 1999 .