Yaakov Benenson

发表

Editorial overview: Tissue, cell and pathway engineering: The advent of complexity.

Yaakov Benenson, Matthias P Lutolf, 2017, Current opinion in biotechnology.

Reverse engineering validation using a benchmark synthetic gene circuit in human cells.

Zhen Xie, Eduardo Sontag, Leonidas Bleris, 2013, ACS synthetic biology.

Synthetic biology of cell signaling

Yaakov Benenson, Jonathan Hansen, Y. Benenson, 2016, Natural Computing.

Rational design of bio-production cell lines

Yaakov Benenson, Raffaele Altamura, Jiten Doshi, 2017 .

Biocomputers: from test tubes to live cells.

Yaakov Benenson, Y. Benenson, 2009, Molecular bioSystems.

Extracting Input/Output Relationship of Mammalian Gene Circuits using Transient Transfections

Yaakov Benenson, Christoph Stelzer, 2017 .

Automated Design of Synthetic Cell Classifier Circuits Using a Two-Step Optimization Strategy.

Niko Beerenwinkel, Yaakov Benenson, Pejman Mohammadi, 2017, Cell systems.

Tapping the computing power of biological molecules gives rise to tiny machines that can speak directly to living cells.

Ehud Shapiro, Yaakov Benenson, E. Shapiro, 2006, Scientific American.

Transplantation of prokaryotic two-component signaling pathways into mammalian cells

Yaakov Benenson, Erik Mailand, Jonathan Hansen, 2014, Proceedings of the National Academy of Sciences.

A Workflow for In Vivo Evaluation of Candidate Inputs and Outputs for Cell Classifier Gene Circuits.

Yaakov Benenson, Jiten Doshi, Joerg Schreiber, 2017, ACS synthetic biology.

Recombinatorial Logic

Yaakov Benenson, Y. Benenson, 2013, Science.

Precise determination of input-output mapping for multimodal gene circuits using data from transient transfection

Yaakov Benenson, Christoph Stelzer, Y. Benenson, 2020, PLoS Comput. Biol..

Formal Methods for the Synthesis of Biomolecular Circuits (Dagstuhl Seminar 18082)

Heinz Koeppl, Oded Maler, Neil Dalchau, 2018, Dagstuhl Reports.

Large-scale DNA-based phenotypic recording and deep learning enable highly accurate sequence-function mapping

Karsten M. Borgwardt, Christian Beisel, Yaakov Benenson, 2020, Nature Communications.

Design and optimization of an RNAi based biomolecular logic circuit

Ron Weiss, Sairam Subramanian, Yaakov Benenson, 2008 .

Genetic programs can be compressed and autonomously decompressed in live cells

Yaakov Benenson, Nicolas Lapique, Y. Benenson, 2017, Nature Nanotechnology.

Multiple Alternative Promoters and Alternative Splicing Enable Universal Transcription-Based Logic Computation in Mammalian Cells.

Yaakov Benenson, Jiten Doshi, Christoph Stelzer, 2020, Cell reports.

Molecular Computing Machines

Ehud Shapiro, Yaakov Benenson, 2004 .

Rationally-designed logic integration of regulatory signals in mammalian cells

Zhen Xie, Leonidas Bleris, Yaakov Benenson, 2010, Nature nanotechnology.

Multi-input biocomputer gene circuits for therapeutic application

Yaakov Benenson, Jiten Doshi, Judith Johanna Jaekel, 2021, Current Opinion in Systems Biology.

Highly modular bow-tie gene circuits with programmable dynamic behavior

Yaakov Benenson, Bartolomeo Angelici, Laura Prochazka, 2014, Nature Communications.

Biocomputing: DNA computes a square root.

Yaakov Benenson, Y. Benenson, 2011, Nature nanotechnology.

Digital switching in a biosensor circuit via programmable timing of gene availability

Yaakov Benenson, Nicolas Lapique, Y. Benenson, 2014, Nature chemical biology.

Bringing DNA computers to life

Ehud Shapiro, Yaakov Benenson, E. Shapiro, 2006 .

Molecular Computing Machines

Ehud Shapiro, Yaakov Benenson, E. Shapiro, 2004 .

TDG in Mammalian DNA Tet-Mediated Formation of 5-Carboxylcytosine and Its Excision

Ron Weiss, Liliana Wroblewska, Yaakov Benenson, 2012 .

Synthetic gene circuits and cellular decision-making in human pluripotent stem cells

Yaakov Benenson, Peter W. Zandstra, Laura Prochazka, 2017 .

Synthetic biology with RNA: progress report.

Yaakov Benenson, Y. Benenson, 2012, Current opinion in chemical biology.

Rapid hierarchical assembly of medium-size DNA cassettes

Zhen Xie, Yaakov Benenson, Sebastian Virreira Winter, 2012, Nucleic acids research.

Model‐guided combinatorial optimization of complex synthetic gene networks

Yaakov Benenson, Joerg Schreiber, Nicolas Lapique, 2016, Molecular systems biology.

Molecular Systems Biology Peer Review Process File Synthetic Incoherent Feed-forward Circuits Show Adaptation to the Amount of Their Genetic Template. Transaction Report

Zhen Xie, Eduardo Sontag, Leonidas Bleris, 2022 .