Shyam Prabhakar

发表

Romulus: robust multi-state identification of transcription factor binding sites from DNase-seq data

Jerzy Tiuryn, Aleksander Jankowski, Shyam Prabhakar, 2016, Bioinform..

scConsensus: combining supervised and unsupervised clustering for cell type identification in single-cell RNA sequencing data

Florian Schmidt, Shyam Prabhakar, Wenjie Sun, 2020, BMC Bioinformatics.

Big Data Analytics and Visualization: Finance

Shyam Prabhakar, Larry Maves, 2017 .

DUBStepR: correlation-based feature selection for clustering single-cell RNA sequencing data

Shyam Prabhakar, Vipul Singhal, Wenjie Sun, 2020, bioRxiv.

scConsensus: combining supervised and unsupervised clustering for cell type identification in single-cell RNA sequencing data

Florian Schmidt, Shyam Prabhakar, Bobby Ranjan, 2021, BMC Bioinform..

Robust clustering and interpretation of scRNA-seq data using reference component analysis

Florian Schmidt, Shyam Prabhakar, Bobby Ranjan, 2021, bioRxiv.

Primate-specific evolution of an LDLR enhancer

Jan-Fang Cheng, Alan M. Moses, Shyam Prabhakar, 2006, Genome Biology.

Close sequence comparisons are sufficient to identify human cis-regulatory elements.

Shyam Prabhakar, Len A Pennacchio, Olivier Couronne, 2005, Genome research.

Structure of Smad1 MH1/DNA complex reveals distinctive rearrangements of BMP and TGF-β effectors

Shyam Prabhakar, Prasanna R. Kolatkar, Ralf Jauch, 2010, Nucleic acids research.

TACO: a general-purpose tool for predicting cell-type–specific transcription factor dimers

Jerzy Tiuryn, Aleksander Jankowski, Shyam Prabhakar, 2014, BMC Genomics.

Mapping cis-regulatory domains in the human genome using multi-species conservation of synteny.

Shyam Prabhakar, Nadav Ahituv, Olivier Couronne, 2005, Human molecular genetics.

TherMos: Estimating protein–DNA binding energies from in vivo binding profiles

Shyam Prabhakar, Prasanna R. Kolatkar, François Guillemot, 2013, Nucleic acids research.

The sequence and analysis of duplication-rich human chromosome 16

Judith D. Cohn, Paul Richardson, Steve Lowry, 2004, Nature.

Detection of weakly conserved ancestral mammalian regulatory sequences by primate comparisons

Jan-Fang Cheng, Shyam Prabhakar, E. Rubin, 2006, Genome Biology.

Deciphering the Sox-Oct partner code by quantitative cooperativity measurements

Shyam Prabhakar, Prasanna R. Kolatkar, Ralf Jauch, 2012, Nucleic acids research.

The DNA sequence and comparative analysis of human chromosome 5

Paul Richardson, Jan-Fang Cheng, Steve Lowry, 2004, Nature.

Comprehensive prediction in 78 human cell lines reveals rigidity and compactness of transcription factor dimers

Jerzy Tiuryn, Ewa Szczurek, Aleksander Jankowski, 2013, Genome research.