James Sharpe

发表

Bringing the grid to the biomedical workbench

Neil P. Chue Hong, Bill Hill, Richard A. Baldock, 2002, Proceedings 11th IEEE International Symposium on High Performance Distributed Computing.

Image formation by linear and nonlinear digital scanned light-sheet fluorescence microscopy with Gaussian and Bessel beam profiles

David Artigas, Jonathan A. Palero, Omar E. Olarte, 2012, Biomedical optics express.

A Computational Clonal Analysis of the Developing Mouse Limb Bud

James Sharpe, Luciano Marcon, Carlos G. Arqués, 2011, PLoS Comput. Biol..

Image Processing Assisted Algorithms for Optical Projection Tomography

Fredrik Georgsson, Abbas Cheddad, James Sharpe, 2012, IEEE Transactions on Medical Imaging.

Kilombo: a Kilobot simulator to enable effective research in swarm robotics pdf

Noemí Carranza-Herrezuelo, Matthew Hartley, Jaap A. Kaandorp, 2015, ArXiv.

Optical projection tomography of vertebrate embryo development.

James Sharpe, Laura Quintana, J. Sharpe, 2011, Cold Spring Harbor protocols.

Author response: Dynamical feature extraction at the sensory periphery guides chemotaxis

Parvez Ahammad, Christopher Werner, Vivek Jayaraman, 2015 .

Multiview 3D Image Tiling for OPT and SPIM Data

James Sharpe, Jim Swoger, Juergen Mayer, 2012 .

EMAP and EMAGE - A framework for understanding spatially organized data

Nicholas Burton, Jonathan Bard, Bill Hill, 2003, Neuroinformatics.

Toward Controllable Morphogenesis in Large Robot Swarms

Sabine Hauert, Daniel Carrillo-Zapata, James Sharpe, 2019, IEEE Robotics and Automation Letters.

ya||a: GPU-Powered Spheroid Models for Mesenchyme and Epithelium.

James Sharpe, Miquel Marin-Riera, Philipp Germann, 2019, Cell systems.

In-silico organogenesis: Image-driven modelling of limb development

James Sharpe, J. Sharpe, 2012, 2012 9th IEEE International Symposium on Biomedical Imaging (ISBI).

Calibration of VaR models with overlapping data

James Sharpe, Gaurang Mehta, Stuart Jarvis, 2019, British Actuarial Journal.

Author response: High-throughput mathematical analysis identifies Turing networks for patterning with equally diffusing signals

James Sharpe, Luciano Marcon, Xavier Diego, 2016 .

Quantitative Measurements in 3-Dimensional Datasets of Mouse Lymph Nodes Resolve Organ-Wide Functional Dependencies

Jens V. Stein, James Sharpe, Jim Swoger, 2012, Comput. Math. Methods Medicine.

Key Features of Turing Systems are Determined Purely by Network Topology

James Sharpe, Luciano Marcon, Xavier Diego, 2017, Physical Review X.

Resolution improvement in emission optical projection tomography

James Sharpe, R Mark Henkelman, Johnathon R. Walls, 2007, Physics in medicine and biology.

Localization and fate of Fgf10-expressing cells in the adult mouse brain implicate Fgf10 in control of neurogenesis

James Sharpe, J. Sharpe, S. Bellusci, 2008, Molecular and Cellular Neuroscience.

Intravital imaging of hair-cell development and regeneration in the zebrafish

James Sharpe, Jim Swoger, Hernán López-Schier, 2013, Front. Neuroanat..

Two ways to use imaging: focusing directly on mechanism, or indirectly via behaviour?

James Sharpe, J. Sharpe, 2011, Current opinion in genetics & development.

Genetic background influences embryonic lethality and the occurrence of neural tube defects in Men1 null mice: relevance to genetic modifiers.

Duncan Davidson, James Sharpe, Allyson Ross, 2009, The Journal of endocrinology.

pMHC affinity controls duration of CD8+ T cell–DC interactions and imprints timing of effector differentiation versus expansion

James Sharpe, Jim Swoger, Jun Abe, 2016, The Journal of experimental medicine.

Budding behaviors: Growth of the limb as a model of morphogenesis

James Sharpe, Sevan Hopyan, S. Hopyan, 2011, Developmental dynamics : an official publication of the American Association of Anatomists.

Fluorescence lifetime optical projection tomography

James Sharpe, Mark A A Neil, Christopher Dunsby, 2008, Journal of biophotonics.

Quantification and Three-Dimensional Imaging of the Insulitis-Induced Destruction of β-Cells in Murine Type 1 Diabetes

James Sharpe, Ulf Ahlgren, Andreas Hörnblad, 2010, Diabetes.

On the concept of mechanism in development

Johannes Jaeger, James Sharpe, J. Sharpe, 2014 .

A unified design space of synthetic stripe-forming networks

James Sharpe, Mark Isalan, Andreea Munteanu, 2014, Nature Communications.

Optical projection tomography as a new tool for studying embryo anatomy

James Sharpe, J. Sharpe, 2003, Journal of anatomy.

A spectrum of modularity in multi‐functional gene circuits

James Sharpe, Andreea Munteanu, James Cotterell, 2017, Molecular systems biology.

Quantification of gene expression patterns to reveal the origins of abnormal morphogenesis

James Sharpe, Jim Swoger, Neus Martínez-Abadías, 2018, bioRxiv.

High-resolution three-dimensional imaging of islet-infiltrate interactions based on optical projection tomography assessments of the intact adult mouse pancreas.

James Sharpe, Ulf Ahlgren, Dan Holmberg, 2008, Journal of biomedical optics.

Dynamical feature extraction at the sensory periphery guides chemotaxis

Parvez Ahammad, Eric T Trautman, Vivek Jayaraman, 2015, eLife.

3 dimensional modelling of early human brain development using optical projection tomography

Richard Baldock, Duncan Davidson, James Sharpe, 2004, BMC Neuroscience.

Data-driven modelling of a gene regulatory network for cell fate decisions in the growing limb bud

James Sharpe, Manu Uzkudun, Luciano Marcon, 2015, Molecular systems biology.

A Local, Self-Organizing Reaction-Diffusion Model Can Explain Somite Patterning in Embryos.

James Sharpe, James Cotterell, J. Sharpe, 2015, Cell systems.

Mechanobiology of embryonic skeletal development: Insights from animal models.

James Sharpe, Patrick J Prendergast, Paula Murphy, 2010, Birth defects research. Part C, Embryo today : reviews.

A landmark-free morphometric staging system for the mouse limb bud

James Sharpe, Michael Rautschka, Laura Quintana, 2011, Development.

In vitro whole-organ imaging: 4D quantification of growing mouse limb buds

James Sharpe, Miguel Torres, James Cotterell, 2008, Nature Methods.

3D confocal reconstruction of gene expression in mouse

James Sharpe, Jacob Hecksher-Sørensen, J. Hecksher-Sørensen, 2001, Mechanisms of Development.

Cell tracing reveals a dorsoventral lineage restriction plane in the mouse limb bud mesenchyme

James Sharpe, Carlos G. Arqués, Miguel Torres, 2007, Development.

Spleen versus pancreas: strict control of organ interrelationship revealed by analyses of Bapx1-/- mice.

James Sharpe, Ulf Ahlgren, Jacob Hecksher-Sørensen, 2006, Genes & development.

3D representation of Wnt and Frizzled gene expression patterns in the mouse embryo at embryonic day 11.5 (Ts19)

Duncan Davidson, James Sharpe, Paula Murphy, 2008, Gene expression patterns : GEP.

Three-Dimensional Imaging of Drosophila melanogaster

James Sharpe, J. Sharpe, Harris Morrison, 2007, PloS one.

Rushikesh Sheth of a Turing-Type Mechanism Hox Genes Regulate Digit Patterning by Controlling the Wavelength

James Sharpe, Luciano Marcon, Laura Quintana, 2013 .

Light sheet fluorescence microscopy for in situ cell interaction analysis in mouse lymph nodes.

Jens V. Stein, James Sharpe, Jim Swoger, 2016, Journal of immunological methods.

OPTiSPIM: integrating optical projection tomography in light sheet microscopy extends specimen characterization to nonfluorescent contrasts.

James Sharpe, Jim Swoger, Jürgen Mayer, 2014, Optics letters.

The Role of Spatially Controlled Cell Proliferation in Limb Bud Morphogenesis

James Sharpe, Jim Swoger, Michael Rautschka, 2010, PLoS biology.

Design principles of stripe-forming motifs: the role of positive feedback

Ricard V. Solé, James Sharpe, Andreea Munteanu, 2014, Scientific Reports.

Geometric Morphometrics on Gene Expression Patterns Within Phenotypes: A Case Example on Limb Development

James Sharpe, Neus Martínez-Abadías, J. Sharpe, 2015, Systematic biology.

Synthetic circuits reveal how mechanisms of gene regulatory networks constrain evolution

Andreas Wagner, James Sharpe, Mark Isalan, 2018, Molecular systems biology.

Gene expression analysis of canonical Wnt pathway transcriptional regulators during early morphogenesis of the facial region in the mouse embryo.

Duncan Davidson, James Sharpe, Paula Murphy, 2009, Gene expression patterns : GEP.

Turing patterns in development: what about the horse part?

James Sharpe, Luciano Marcon, J. Sharpe, 2012, Current opinion in genetics & development.

Scapula development is governed by genetic interactions of Pbx1 with its family members and with Emx2 via their cooperative control of Alx1

James Sharpe, Laura Quintana, J. Sharpe, 2010, Development.

The fin-to-limb transition as the re-organization of a Turing pattern

James Sharpe, Koh Onimaru, Luciano Marcon, 2016, Nature Communications.

An atlas of gene regulatory networks reveals multiple three-gene mechanisms for interpreting morphogen gradients

James Sharpe, James Cotterell, J. Sharpe, 2010, Molecular systems biology.

High-throughput mathematical analysis identifies Turing networks for patterning with equally diffusing signals

James Sharpe, Luciano Marcon, Xavier Diego, 2016, eLife.

Tomographic molecular imaging and 3D quantification within adult mouse organs

James Sharpe, Ulf Ahlgren, Dan Holmberg, 2007, Nature Methods.

Rushikesh Sheth of a Turing-Type Mechanism Genes Regulate Digit Patterning by Controlling the Wavelength Hox

James Sharpe, Luciano Marcon, Laura Quintana, 2012 .

Perspective: The promise of multi-cellular engineered living systems

Shuichi Takayama, Ron Weiss, Shoji Takeuchi, 2018, APL bioengineering.

A global “imaging’’ view on systems approaches in immunology

James Sharpe, Burkhard Ludewig, Gennady Bocharov, 2012, European journal of immunology.

FishNet: an online database of zebrafish anatomy

James Sharpe, Silke Berger, Thomas F Schilling, 2007, BMC Biology.